View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10896_high_3 (Length: 366)
Name: NF10896_high_3
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 32239883 - 32240241
Alignment:
| Q |
1 |
ttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcatagctaggtgctacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32239883 |
ttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcatagctaggtgctacttc |
32239982 |
T |
|
| Q |
101 |
tgtgtgctatattatggtgaaagtaatgggttagagatgtaggctttttgtattctaatgtgatctattaatcttacaatagaacctcttcaaatccaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32239983 |
tgtgtgctatattatggtgaaagtaatgggttagagatgcaggctttttgtattctaatgtgatctattaatcttacaatagaacctcttcaaatccaac |
32240082 |
T |
|
| Q |
201 |
tgttccatacactaccagcgggatccgcccttcttcgcttctgctgctactctctgtgggttttctggtttctgaggatatgtagctgggtgctacgcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240083 |
tgttccatacactaccagcgggatccgcccttcttcgcttctgctgctgctctctgtgggttttctggtttctgaggatatgtagctgggtgctacgcct |
32240182 |
T |
|
| Q |
301 |
gttcctttttactttcnnnnnnnnngtgtgtggtttataggcttctacggtgctctctg |
359 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
32240183 |
gttcctttttactttctttttttttgtgtgtggtttataggcttctgcggtgctctctg |
32240241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University