View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10896_low_1 (Length: 428)
Name: NF10896_low_1
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 19331105 - 19330746
Alignment:
| Q |
1 |
tcttctcatcatcaagatattttttagtgtcatgaggtaatccaatatgcaaagccacaatctctttttcttctttgaactcaaaaccctcaatttgtgg |
100 |
Q |
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| T |
19331105 |
tcttctcatcatcaagatattttttagtgtcatgaggtaatccaatatgcaaagccacaatctctttttcttctttgaactcaaaaccctcaatttgtgg |
19331006 |
T |
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| Q |
101 |
cacttcacgttcttcatcttttgaaaaatttgcactcaaaataggaaagaattgaatagtttcattttgagtggttgaagaagatgatgatgaatatgaa |
200 |
Q |
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| T |
19331005 |
cacttcacgttcttcatcttttgaaaaatttgcactcaaaataggaaagaattgaatagtttcattttgagtggtagaagaagatgatgatgatgatgaa |
19330906 |
T |
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| Q |
201 |
gttagatatgatttagaggaattagatggtttgagccactcaatgaaattattgtcctctacatcacactccatcatagccatattcttaaccttgatga |
300 |
Q |
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| T |
19330905 |
gttagatatgatttagaggaattagatggtttgagccactcaatgaaattattgtcctctacatcacactccatcatagccatattctttaccttgatga |
19330806 |
T |
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| Q |
301 |
gtgaaaccaagcacttatatgatggtttgatttaataatattaataattaatttgggaga |
360 |
Q |
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| T |
19330805 |
gtgaaatcaagcacttatatgatggtttgatttaataatattaataattaatttgggaga |
19330746 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 36262750 - 36262782
Alignment:
| Q |
216 |
gaggaattagatggtttgagccactcaatgaaa |
248 |
Q |
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| T |
36262750 |
gaggaattagatggtttgagccattcaatgaaa |
36262782 |
T |
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