View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10896_low_10 (Length: 268)

Name: NF10896_low_10
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10896_low_10
NF10896_low_10
[»] chr6 (2 HSPs)
chr6 (87-253)||(33392369-33392535)
chr6 (1-59)||(33392520-33392578)
[»] chr2 (1 HSPs)
chr2 (113-190)||(17436225-17436303)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 33392535 - 33392369
Alignment:
Q  87 acttttgcatagatacttatatttcgaagacaaacttttcctttgtagctttcttaaacaacacttttagagcacttgttagcacatgacccaaaaaata 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33392535 acttttgcatagatacttatatttcgaagacaaacttttcctttgtagctttcttaaacaacacttttagagcacttgttagcacatgacccaaaaaata 33392436  T
Q  187 taatcaaagcttaccatccaacctatccggccctaagtcctaactctcgatatctgtagtttggatc 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33392435 taatcaaagcttaccatccaacctatccggccctaagtcctaactctcgatatctgtagtttggatc 33392369  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33392578 - 33392520
Alignment:
Q  1 ttgcaagatatagcatggctcgtttaaaaaatcaaaagaagtaacttttgcatagatac 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33392578 ttgcaagatatagcatggctcgtttaaaaaatcaaaagaagtaacttttgcatagatac 33392520  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 17436303 - 17436225
Alignment:
Q  113 aagacaaacttttcctttgtagctttcttaaacaacacttttagagcacttgttagcacatga-cccaaaaaatataat 190  Q
    |||||||||||| ||||| |||||||||   ||||||  ||||||||||||||||| |||||| |||||||||||||||    
T  17436303 aagacaaactttccctttctagctttctgtgacaacatatttagagcacttgttagaacatgaccccaaaaaatataat 17436225  T

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