View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10896_low_11 (Length: 266)
Name: NF10896_low_11
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 40185625 - 40185867
Alignment:
| Q |
17 |
accttgagtaagtaaagcatcaaccagaacttcaaacaaatcatcatctacgccggcaagattctgttcaatcatcttagcaagagaaagtaatgctttg |
116 |
Q |
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| T |
40185625 |
accttgagtaagtaaagcatcaaccagaacttcaaacaaatcatcatctacgccggcaagattctgttcaatcatcttagcaagagaaagtaatgctttg |
40185724 |
T |
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| Q |
117 |
tctagttcaccagcatcacagtaccctttgatcaagatcttccaagtcttgatcacctcatagtcgt---ccatcatgtacacgcccctgatagtgaagc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
40185725 |
tctagttcaccagcatcacagtaccctttgatcaagatcttccaagtcttgatcacctcatagtcgttgaccatcatgtacacacccctgatagtgaagc |
40185824 |
T |
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| Q |
214 |
aaccgcaagcttgcatctcatcaattaccttacttgcttcttc |
256 |
Q |
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| T |
40185825 |
aaccgcaagcttgcatctcatcaattaccttacttgcttcttc |
40185867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 43427543 - 43427491
Alignment:
| Q |
117 |
tctagttcaccagcatcacagtaccctttgatcaagatcttccaagtcttgat |
169 |
Q |
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| T |
43427543 |
tctagttcgccggcatcacagtacccttggatcaagatggtccaagtcttgat |
43427491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 43436036 - 43435996
Alignment:
| Q |
129 |
gcatcacagtaccctttgatcaagatcttccaagtcttgat |
169 |
Q |
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| T |
43436036 |
gcatcacagtacccttggatcaagatagtccaagtcttgat |
43435996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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