View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10896_low_12 (Length: 256)
Name: NF10896_low_12
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 41602466 - 41602702
Alignment:
| Q |
1 |
tagactcactcaggtttgctttggttgagattttccgattgtggctgtgactcggttgcaaccgtgaacgtgtggctgagagctgattgggttctccgac |
100 |
Q |
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| T |
41602466 |
tagactcactcatgtttgctttggttgagatttttcgtttgtggctgtgacccggttgcaaccgtgaaggtgtgtctgagagctgattgggttctccgac |
41602565 |
T |
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| Q |
101 |
gcggcggtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaattgaaattttcaaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41602566 |
gcggcggtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaattgaaattttcaaacct |
41602665 |
T |
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| Q |
201 |
aataccattgaaatttactttaaaatcacagattgaa |
237 |
Q |
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| T |
41602666 |
aataccattgaaatttactttaaaatcacatattgaa |
41602702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 9470746 - 9470510
Alignment:
| Q |
1 |
tagactcactcaggtttgctttggttgagattttccgattgtggctgtgactcggttgcaaccgtgaacgtgtggctgagagctgattgggttctccgac |
100 |
Q |
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|||||||||||| ||||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9470746 |
tagactcactcaagtttgctttggttgagatttttcggttgtggctgtgacccggttgcaaccgtgaaggtgtggctgagagctgattgggttctccgac |
9470647 |
T |
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| Q |
101 |
gcggcggtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaattgaaattttcaaacct |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9470646 |
gcggcagtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaattgaaattttcaaacct |
9470547 |
T |
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| Q |
201 |
aataccattgaaatttactttaaaatcacagattgaa |
237 |
Q |
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|||||||||||||||| ||||||||||| |||||||| |
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| T |
9470546 |
aataccattgaaatttgctttaaaatcaaagattgaa |
9470510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 9999018 - 9998910
Alignment:
| Q |
24 |
gttgagattttccgattgtggctgtgactcggttgcaaccgtgaacgtgtggctgagagctgattgggttctccgacgcggcggtgacaggatgaagttt |
123 |
Q |
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|||| ||||||||| | ||||||||||| |||||||||| || | ||||||||||| | ||||| |||||||||||||||| | ||| ||||| ||||| |
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| T |
9999018 |
gttgggattttccggtggtggctgtgacgcggttgcaactgtccaggtgtggctgagggatgattaggttctccgacgcggc-gcgacgggatggagttt |
9998920 |
T |
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| Q |
124 |
tgttgatttg |
133 |
Q |
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|||||||||| |
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| T |
9998919 |
tgttgatttg |
9998910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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