View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10896_low_2 (Length: 395)
Name: NF10896_low_2
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 21 - 381
Target Start/End: Complemental strand, 45341960 - 45341602
Alignment:
| Q |
21 |
tacaggattgggatttggtggtggtggtggggctcgtactggaacgttgatgtctttgtcgtatttgttggggtttgaggaagaaggtnnnnnnnnnnnn |
120 |
Q |
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| T |
45341960 |
tacaggattgggatttggtggtggtggtggggctcgtactggaacgttgatgtctttgtcgtatttgttggggtttgaggaagaaggtatcgacaacaac |
45341861 |
T |
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| Q |
121 |
nnnnnn---tacacactcattcatacacctcatcgtaaacttcttcctcattctggtaatttttactttccttagcttgtttaattctagtaccttttaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45341860 |
aacaacaactacacactcattcatacacctcatcgtaaacttcttcctcattctggtaatttttactttcctt-----gtttaattctagtaccttttaa |
45341766 |
T |
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| Q |
218 |
acttaatcattacaaatttgtttgtatttattcattaaatttggaagaatgattatttttgttttctagagatttgtcttttccttgaatctgtgtgttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
45341765 |
acttaatcattacaaatttgtttgtatttattcattaaatttgggagaatgattatttttcttttctagagatttgtctttttcttgaatctgtgtgttc |
45341666 |
T |
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| Q |
318 |
attttgctgattaagaaatttatttattcaatattcatgagtgtattaatttgttgttatagtt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45341665 |
attttgctgattaagaaatttatttattcaatattcatgagtgtattaatttgttgttatagtt |
45341602 |
T |
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