View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10896_low_21 (Length: 228)
Name: NF10896_low_21
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_low_21 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 5432470 - 5432669
Alignment:
| Q |
13 |
gcatagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5432470 |
gcatagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactca |
5432569 |
T |
|
| Q |
113 |
gattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttccgttatcatgcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5432570 |
gattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatggatttccgttatcatgcat |
5432669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 5175927 - 5176123
Alignment:
| Q |
16 |
tagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagat |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||||| | |
|
|
| T |
5175927 |
tagggaacaaaagctgttgagggattgactttgaagttgccaagagatagtgcgaaatgttatagtactaaagcatttgagaacatgaagaaactcaggt |
5176026 |
T |
|
| Q |
116 |
tgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttccgttatcatgcat |
212 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
5176027 |
tgcttcaacttgctggtgtgcaacttgatggggattttgagtatctttcaagaaatctgagatggctttcttggaatggatttcctttatcatgcat |
5176123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 5277754 - 5277950
Alignment:
| Q |
16 |
tagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagat |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||||| | |
|
|
| T |
5277754 |
tagggaacaaaagctgttgagggattgactttgaagttgccaagagatagtgcgaaatgttatagtactaaagcatttgagaacatgaagaaactcagtt |
5277853 |
T |
|
| Q |
116 |
tgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttccgttatcatgcat |
212 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
5277854 |
tgcttcaacttgctggtgtgcaacttgatggggattttgagtatctttcaagaaatctgagatggctttcttggaatggatttcctttatcatgcat |
5277950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 5074702 - 5074507
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||| | ||||| |||| |
|
|
| T |
5074702 |
agggaacaaaagttgttgagggattggctttgaagttgccaagagaaaatgcaaaatgttttagtactaaagcatttaagaagatggaaaaacttcgatt |
5074603 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttccgttatcatgcat |
212 |
Q |
| |
|
|||| ||||||||||||| || ||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||| ||||||| |
|
|
| T |
5074602 |
gcttcaacttgctggtgtacaacttgatggggattttgaacatctttcaagaaatttgagatggctttcatggaatggatttcctttaacatgcat |
5074507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 5349309 - 5349483
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
||||||||| | ||||| |||| || |||||||||||||||||| || || |||||||| ||||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
5349309 |
agggaacaacaactattaaggggctggctttgaagttgccaagagctaatgaaaaatgttttagtactaaagcattcaagaagatgaagagactcagatt |
5349408 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaa |
191 |
Q |
| |
|
|||| |||||||||| || | |||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
5349409 |
gcttcaacttgctggggtaaaacttgatggagattttgaatatctttcaaaaaatctgagatggctttcttggaa |
5349483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 5095101 - 5095282
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||||| | || |||||||| ||||||| ||||| |||||||||| || ||||||||| |
|
|
| T |
5095101 |
agggaacaaaagctattaaggggctgactttgaagttcccaagagccaatgaaaaatgttttagtactaaagcattcaagaagatgacgagactcagatt |
5095200 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagattt |
198 |
Q |
| |
|
|||| |||||||||| || | |||||||| |||||||| ||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
5095201 |
gcttcaacttgctggggttaaacttgatggagattttgaatatctttcgagaaatctgagatggctgtcttggaatggattt |
5095282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 5355621 - 5355444
Alignment:
| Q |
15 |
atagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcaga |
114 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||| ||| | | |
|
|
| T |
5355621 |
atagggaactaaagctataaagggattggctttgaagttgccaagagttgatgcaaaatgttttagtactaaagcatttaagaagatgaagagactgaaa |
5355522 |
T |
|
| Q |
115 |
ttgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaat |
192 |
Q |
| |
|
|||||| ||||||||| || | |||||||| ||||||||| |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
5355521 |
ttgcttctacttgctggagtaaaacttgatggaaattttgaatgtctttcaagaaatctgaggtggctgtcttggaat |
5355444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 5369417 - 5369598
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
||||||||||||||||| |||| || | |||||||||||||||| || || |||| ||| ||| ||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
5369417 |
agggaacaaaagctattaaggggctggcgttgaagttgccaagagctaatgaaaaacgttttagcactaaagcattcaagaagatgaacaaactcagatt |
5369516 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagattt |
198 |
Q |
| |
|
||| |||||||||| || | |||||||| |||||||| ||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
5369517 |
gctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt |
5369598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 5068143 - 5067968
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
||||||| ||| ||||| |||| || ||||||||||||||||| || || |||||||| ||||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
5068143 |
agggaactaaaactattaaggggctggctttgaagttgccaagatctaatgaaaaatgttttagtactaaagcattcaagaagatgaagagactcagatt |
5068044 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaat |
192 |
Q |
| |
|
|||| |||||||||| || | |||||||| |||||||| ||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
5068043 |
gcttcaacttgctggggtaaaccttgatggagattttgaatatctttcgagaaatctgatatggctgtcttggaat |
5067968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 5691098 - 5690915
Alignment:
| Q |
14 |
catagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcag |
113 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||||||| || || | |||||| || ||||| |||||| |||||||| | ||||| || |
|
|
| T |
5691098 |
catagggaacaaaag---ttgagggactgagtttgaagttgccaagagctaatgtacaatgttttaatactgaagcatttgagaagatggaaaaactgag |
5691002 |
T |
|
| Q |
114 |
attgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttcc |
200 |
Q |
| |
|
|||| || |||||||||| || | ||||||||||||||||| | ||||||| ||||||||||||| |||||||| || ||||||| |
|
|
| T |
5691001 |
attgtttcaacttgctggagtagaacttgatgggaattttgataaactttcaaaaaatctgagatggttttcttgggatggatttcc |
5690915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 200
Target Start/End: Complemental strand, 5147857 - 5147702
Alignment:
| Q |
45 |
tttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttgat |
144 |
Q |
| |
|
|||||||||||||| | |||| ||||||||| ||||||| |||||||||||||||| | ||| ||||||||| ||||| |||| || || |||||| |
|
|
| T |
5147857 |
tttgaagttgccaatatctagttcaaaatgttttagtactaaagcatttaagaagatgacaagactgagattgcttcaacttactggagtacaacttgat |
5147758 |
T |
|
| Q |
145 |
gggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttcc |
200 |
Q |
| |
|
||| |||||||| | |||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5147757 |
ggggattttgaatacatttcgagaaatctgagatggctttcttggaatggatttcc |
5147702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 5182868 - 5182685
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||| || | || |||||| | |||||| ||||| ||| ||||||| ||||| ||| | |
|
|
| T |
5182868 |
agggaacaaaagctgttgagggattagctttgaaattgccaacagcaaatggaaaatgctttagtaccaaagcattcaaggagatgaaaaaacttagact |
5182769 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttcc |
200 |
Q |
| |
|
|||| |||||||| |||| || ||||| ||| | |||||| |||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
5182768 |
gcttcaacttgctagtgtacaacttgagggggactttgaatatctttcaagaaatctgatatggctttcttggaatggatttcc |
5182685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 5396120 - 5396298
Alignment:
| Q |
14 |
catagggaacaaaagctattgagggattgactttgaagttgccaagagatag-tgcaaaatgttatagtactgttgcatttaagaagatgaagaaactca |
112 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||||| ||||||| | | || || |||||| | |||||| ||||| ||||||||||| ||||||| |
|
|
| T |
5396120 |
catagggaacaaaagctgttgagggactagctttgaaattgccaaca-acagatgaaaaatgctttagtaccaaagcattcaagaagatgaaaaaactca |
5396218 |
T |
|
| Q |
113 |
gattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaat |
192 |
Q |
| |
|
|| ||||| ||||||||||| | || |||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
5396219 |
gactgcttcaacttgctggtttacaacttgatggtgattttgaatatctttcaagaaatgtgagatggctttcttggaat |
5396298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 5424685 - 5424860
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
||||||||||| | ||| |||| || |||||||||||||||||| || || |||||||| ||||||| ||||| |||||||||| || ||||||||| |
|
|
| T |
5424685 |
agggaacaaaaacgattaaggggctggctttgaagttgccaagagctaatgaaaaatgttttagtactaaagcattcaagaagatgacgagactcagatt |
5424784 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaat |
192 |
Q |
| |
|
|||| |||||||||| || | ||| |||| ||||| || ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
5424785 |
gcttcaacttgctggggtaaaacttaatggagattttaaatatctttcgagaaatctgagatggctgtcttggaat |
5424860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 5103896 - 5103715
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||||| | || |||||||| ||||||| ||||| ||||||||||||| ||| ||| | |
|
|
| T |
5103896 |
agggaacaaaagctattaagggactggctttgaagttgccaagatccaatgaaaaatgttttagtactaaagcattcaagaagatgaagagacttagact |
5103797 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagattt |
198 |
Q |
| |
|
|||| ||||| |||| || | |||||||| |||||||| ||||||| |||||||||| || ||| ||||||||| ||||| |
|
|
| T |
5103796 |
gcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggattt |
5103715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 5158493 - 5158312
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
||||||||||| ||||| |||| || |||||||||||| ||||| || || |||||||| |||||| ||||| ||||||||||||| ||| ||||| |
|
|
| T |
5158493 |
agggaacaaaaactattaaggggctggctttgaagttgcaaagagctaatgaaaaatgtttcagtactaaagcattcaagaagatgaagagacttagatt |
5158394 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagattt |
198 |
Q |
| |
|
|||| |||||||||| || | |||| ||| ||||| || || |||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
5158393 |
gcttcaacttgctggggtcaaacttgttggagattttaaatatatttcgagaagtctgagatggctgtcttggaatagattt |
5158312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 5132880 - 5132694
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagat---gaagaaactcag |
113 |
Q |
| |
|
||||||||||| | ||| |||| ||| |||||||||||||||||| || |||||||||| ||||||| ||||||||| |||| || || ||||| |
|
|
| T |
5132880 |
agggaacaaaatcaattaaggggttggctttgaagttgccaagagctaatgcaaaatgtcttagtactaaagcatttaaggagatgacgacgaggctcag |
5132781 |
T |
|
| Q |
114 |
attgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttcc |
200 |
Q |
| |
|
||||||| |||||| ||| || | |||||||| |||||||| |||||||||||||| |||||| | | ||||||| ||||||| |
|
|
| T |
5132780 |
attgcttcaacttgatggggtaaaacttgatggagattttgaaatcctttcaagaaatctaagatggttgtgttggaatggatttcc |
5132694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 5261070 - 5260937
Alignment:
| Q |
44 |
ctttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttga |
143 |
Q |
| |
|
||||||||||||| | || || ||||||||||| ||||||| |||||| | |||||||||| |||||||||||| ||||||||| || | ||||| |
|
|
| T |
5261070 |
ctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagattgcttcaacttgctgaagtaaaacttga |
5260971 |
T |
|
| Q |
144 |
tgggaattttgaacatctttcaagaaatctgaga |
177 |
Q |
| |
|
|||| |||||||| || |||||||| || ||||| |
|
|
| T |
5260970 |
tggggattttgaatatgtttcaagagatttgaga |
5260937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 5285068 - 5284935
Alignment:
| Q |
44 |
ctttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttga |
143 |
Q |
| |
|
||||||||||||| | || || ||||||||||| ||||||| |||||| | |||||||||| |||||||||||| ||||||| | || | ||||| |
|
|
| T |
5285068 |
ctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagattgcttcaacttgcagaagtaaaacttga |
5284969 |
T |
|
| Q |
144 |
tgggaattttgaacatctttcaagaaatctgaga |
177 |
Q |
| |
|
|||| |||||||| || |||||||| || ||||| |
|
|
| T |
5284968 |
tggggattttgaatatgtttcaagagatttgaga |
5284935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 5446138 - 5446318
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
|||||| ||||| |||| |||| || ||||||| ||||| | | || ||||||||||| ||||||| |||||| | |||||||||| ||||||||| |
|
|
| T |
5446138 |
agggaaaaaaaggtattttgggactggctttgaaattgcctacaactaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagactcagatt |
5446237 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatt |
197 |
Q |
| |
|
||| ||||||||| || | |||||||| |||||||| || |||| ||| |||| | |||||| || |||||| |||| |
|
|
| T |
5446238 |
tcttcaacttgctgaggtaaaacttgatggagattttgaatatgtttcgagagatctaacatggctgtcatggaatggatt |
5446318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 36214821 - 36214624
Alignment:
| Q |
15 |
atagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcaga |
114 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||| ||||||||| | || |||| | | ||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
36214821 |
atagggaacaaaagctgttgagggtttggctttgaaattgccaagaacaaatggaaaacgctttagtactaaagcatttaagaagatgaaaagactcaga |
36214722 |
T |
|
| Q |
115 |
ttgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttccgttatcatgcat |
212 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||| | ||||| ||||||||| |||| |||||||||||||||||||| | ||||| ||| ||||||| |
|
|
| T |
36214721 |
ttgcttcaacttgctggtgtacaacttgatggggactttgagtatctttcaaaaaatttgagatggctttcttggaatggttttcctttaacatgcat |
36214624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 4125385 - 4125188
Alignment:
| Q |
15 |
atagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcaga |
114 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| ||||| || ||||||| || ||| ||| || | ||||||||||||||||||||||||||| |
|
|
| T |
4125385 |
atagggaacaaaagctgttgagggactgactttgaagctgccaggacgtagtgcacaacgttttagcaccgaagcatttaagaagatgaagaaactcaga |
4125286 |
T |
|
| Q |
115 |
ttgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttccgttatcatgcat |
212 |
Q |
| |
|
|||||| ||||| |||||| || |||||||| ||||| || ||||||||| | | |||||||||| |||||| ||||||| ||| ||||||| |
|
|
| T |
4125285 |
ttgcttcaactttctggtgcacaacttgatggagattttaaatatctttcaaaacaattgagatggctacactggaatggatttcctttaacatgcat |
4125188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 4334605 - 4334800
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||| | ||||||| || ||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4334605 |
agggaacaaaaactgttgagggattgactttgaagctgccaggtcgtagtgcacaacgttttagtaccaaagcatttaagaagatgaagaaactcagatt |
4334704 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttccgttatcatgcat |
212 |
Q |
| |
|
|||| ||||| |||| | || |||||||| ||||| || ||||||| ||||| |||||||||| |||||| ||||||| ||| ||||||| |
|
|
| T |
4334705 |
gcttcaactttctggcgcacaacttgatggagattttaaatatctttccagaaagttgagatggctgcactggaatggatttcctttaacatgcat |
4334800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 4321980 - 4321823
Alignment:
| Q |
14 |
catagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcag |
113 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||| | |||||||| || | | ||||||| ||||| |||| |||||||||||||| |
|
|
| T |
4321980 |
catagggaacaaaagctgttgagggactgactttgaagatgccatgtcatagtgcacaacgatttagtactaaaacatttgagaacatgaagaaactcag |
4321881 |
T |
|
| Q |
114 |
attgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaat |
171 |
Q |
| |
|
|||||| ||||| ||||||| || |||||||| ||||| || || ||||||||||| |
|
|
| T |
4321880 |
attgctgcaactttctggtgtacaacttgatggagattttaaatatatttcaagaaat |
4321823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 4344063 - 4344258
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| ||| ||||| | |||| || || ||| |||||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
4344063 |
agggaacaaaagctgttgaaggactgacttttaagatgccaggtcgtagtacacaacgttttagtaccaaagcatttgagaacatgaagaaacttagatt |
4344162 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttccgttatcatgcat |
212 |
Q |
| |
|
||| ||||| ||||||| || |||||||| ||||| || |||||||||||||| |||||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
4344163 |
gctgcaactttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgagatggctacactggaatggatttccgttagcatgcat |
4344258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 4134720 - 4134594
Alignment:
| Q |
66 |
tgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttca |
165 |
Q |
| |
|
||||||||||| |||||| ||||||| |||| ||||||||||| ||||||||| ||| | ||||||| || |||||||| ||||| || |||||||| |
|
|
| T |
4134720 |
tgcaaaatgttttagtaccaatgcatttgagaacatgaagaaactgagattgcttcaaccttctggtgtacaacttgatggagattttaaatatctttca |
4134621 |
T |
|
| Q |
166 |
agaaatctgagatggctttcttggaat |
192 |
Q |
| |
|
|||||| |||||||||| | ||||||| |
|
|
| T |
4134620 |
agaaatttgagatggctgtgttggaat |
4134594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 4352342 - 4352507
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
|||||||||||| | |||| ||| ||||||| ||| ||||| | ||||||| || ||| |||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
4352342 |
agggaacaaaagttgttgaaggactgacttttaagatgccaggtcgtagtgcacaacgttttagtaccaaagcatttgagaacatgaagaaactcagatt |
4352441 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggct |
182 |
Q |
| |
|
||| ||||| ||||||| || |||||||| ||||| || |||||||||||||| ||| |||||| |
|
|
| T |
4352442 |
gctgcaactttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgaaatggct |
4352507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 4359591 - 4359714
Alignment:
| Q |
89 |
catttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttg |
188 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||| | ||||| || |||||||| ||||| |||||||||||||||| |||||||||| || |
|
|
| T |
4359591 |
catttgagaacatgaagaaactcagattgctgcaactttccggtgtacaacttgatggagattttaaacatctttcaagaaaattgagatggctgcagtg |
4359690 |
T |
|
| Q |
189 |
gaatagatttccgttatcatgcat |
212 |
Q |
| |
|
|||| ||||||| ||| ||||||| |
|
|
| T |
4359691 |
gaatggatttcctttaacatgcat |
4359714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 6533596 - 6533502
Alignment:
| Q |
88 |
gcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggct |
182 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||||||||||| || |||| ||||| || |||||||||| |||| |||||||| |
|
|
| T |
6533596 |
gcatttaagaagatgaataagctcagattgcttcaacttgctggtgtgcaactgaatggagattttaaatgtctttcaagagatcttagatggct |
6533502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 6757499 - 6757591
Alignment:
| Q |
88 |
gcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatgg |
180 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||| || |||||| |||| ||||| || |||||||| || |||| |||||| |
|
|
| T |
6757499 |
gcatttaagaagatgaataaactcagattgctacaacttgttggggtacagcttaatggagattttaaatatctttcaggagatcttagatgg |
6757591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 6835310 - 6835403
Alignment:
| Q |
87 |
tgcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatgg |
180 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||| |||||||||| ||| | ||| | || ||||| |||| ||||| |||||||| |||||| |
|
|
| T |
6835310 |
tgcatttcagaagatgtataaactcagattgcttcaacttgctggggtgaaacttaaaggagattttaaacacctttcgagaaatcttagatgg |
6835403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 6499206 - 6499168
Alignment:
| Q |
88 |
gcatttaagaagatgaagaaactcagattgcttgaactt |
126 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
6499206 |
gcatttaagaagatgaataaactcagattgcttcaactt |
6499168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 6546811 - 6546753
Alignment:
| Q |
88 |
gcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttgatgg |
146 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| ||| ||| ||||| |||| |
|
|
| T |
6546811 |
gcatttaagaagatgaataaactcagattgcttcgacttggtggggtgaagcttaatgg |
6546753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 6623341 - 6623303
Alignment:
| Q |
88 |
gcatttaagaagatgaagaaactcagattgcttgaactt |
126 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
6623341 |
gcatttaagaagatgaataaactcagattgcttcaactt |
6623303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 6714888 - 6714974
Alignment:
| Q |
89 |
catttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctga |
175 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| ||| ||||| | || ||||| || |||||||| || |||||| |
|
|
| T |
6714888 |
catttaagaagatgaataaactcagattgcttcgccttgctggggtgaagcttaaaggagattttaaatatctttcaggagatctga |
6714974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 6772247 - 6772296
Alignment:
| Q |
88 |
gcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgca |
137 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
6772247 |
gcatttaagaagatgaacaaactcagattgcttcgcctcgctggtgtgca |
6772296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 6588850 - 6588818
Alignment:
| Q |
88 |
gcatttaagaagatgaagaaactcagattgctt |
120 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
6588850 |
gcatttaagaagatgaataaactcagattgctt |
6588818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 6795433 - 6795465
Alignment:
| Q |
88 |
gcatttaagaagatgaagaaactcagattgctt |
120 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
6795433 |
gcatttaagaagatgaacaaactcagattgctt |
6795465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 9634 - 9448
Alignment:
| Q |
14 |
catagggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcag |
113 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||||||||||||| | |||| ||||||||| |||| ||| ||||| |||||||| ||| ||| || |
|
|
| T |
9634 |
catagggaacaaaagctgttgagggactagctttgaagttgccaataactagttcaaaatgttttagtgctgaatcatttgagaagatggagagactaag |
9535 |
T |
|
| Q |
114 |
attgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatagatttcc |
200 |
Q |
| |
|
||||||| |||||||||| || || |||||||| |||| || ||||||||||||| || |||||||| | |||||| ||||||| |
|
|
| T |
9534 |
attgcttcaacttgctggagtacaacttgatggagatttcgagtatctttcaagaaaactaagatggctgtgttggaaaggatttcc |
9448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 8876923 - 8877098
Alignment:
| Q |
17 |
agggaacaaaagctattgagggattgactttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagatt |
116 |
Q |
| |
|
|||||||||||| | ||||||| | || |||||||||||| |||| ||||||| ||| ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
8876923 |
agggaacaaaagttgttgagggtcttgctctgaagttgccaatagatgatgcaaaacgttttagtactaaagcatttaagaagatgaagagactcagatt |
8877022 |
T |
|
| Q |
117 |
gcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaat |
192 |
Q |
| |
|
|||| ||||||| || || || |||||||| || |||||| |||||| | ||||||||||| | | ||||||||| |
|
|
| T |
8877023 |
gcttcaacttgccggcgtacaacttgatggaaactttgaatttctttccaaaaatctgagattgttatcttggaat |
8877098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 5761 - 5799
Alignment:
| Q |
88 |
gcatttaagaagatgaagaaactcagattgcttgaactt |
126 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
5761 |
gcatttaagaagatgaataaactcagattgcttcaactt |
5799 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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