View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10896_low_24 (Length: 212)
Name: NF10896_low_24
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 27240433 - 27240234
Alignment:
| Q |
1 |
ccatgtctcttccccctgaaatcgacgatttcatcaaacaatccatcgaccactcattaggtcttcccatctcctcccaaaccctcgacatcaagcttcg |
100 |
Q |
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| T |
27240433 |
ccatgtctcttccccccgaaatcgacgatttcatcaaacaatccatcgaccactcattaggtctccccatctcctcccaaaccctcgacatcaagcttcg |
27240334 |
T |
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| Q |
101 |
tgcttcgaaacaatctgaacaaaatctccgcgatcagaacacttcactccttcaaaaactaaaagaaagagacgaactcatcgaacaatccaaggtttct |
200 |
Q |
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| T |
27240333 |
cgcctccaaagaatccgaacaaaatctccgcgatcagaacacttcactccttcaaaaactaaaagaaagagacgaactcattgaacaatccaaggtttct |
27240234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 27217755 - 27217669
Alignment:
| Q |
112 |
aatctgaacaaaatctccgcgatcagaacacttcactccttcaaaaactaaaagaaagagacgaactcatcgaacaatccaaggttt |
198 |
Q |
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| T |
27217755 |
aatccgaacagaatctccgcgatcagaacacttcactcctcaaaaaactaaaggaaaaagacaaactcatcgaacaatctaaggttt |
27217669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 27201958 - 27201883
Alignment:
| Q |
123 |
aatctccgcgatcagaacacttcactccttcaaaaactaaaagaaagagacgaactcatcgaacaatccaaggttt |
198 |
Q |
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|||||| |||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
27201958 |
aatctctgcgatcagaacacttcactcctcaaaaatctaaaggaaaaagacgaactcatcgaacaatctaaggttt |
27201883 |
T |
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