View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10896_low_6 (Length: 345)
Name: NF10896_low_6
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 4 - 335
Target Start/End: Original strand, 2667386 - 2667717
Alignment:
| Q |
4 |
agaggtgagagggaaatgtattatgtaatctctatttttctagtttctagtttgaaccttgttcttcttgtgataaataacactttaattttctgttcct |
103 |
Q |
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| T |
2667386 |
agaggtgaaagggaaatgtattatgtaatctctatttttctagtttctagtttgaaccttgttcttcttgtgataaataatactttaattttctgttcct |
2667485 |
T |
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| Q |
104 |
ggttttgtttcgttttctatctcaatctcgtttagttctttgatgtaagctttgtttgtttgctcattcattattctatttcgcacgtcgatatatcaag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667486 |
ggttttgtttcgttttctatctcaatctcgtttagttctttgatgtaagctttgtttgtttgctcattcattattctatttcgcacgtcgatatatcaag |
2667585 |
T |
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| Q |
204 |
aatgcagtgacattgaatcctcctccagagaggagttcgttggatttggcacctaaatcggaataatttaggtttcatatgttgacgactttgataatgt |
303 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2667586 |
aatgcagtgacattgaatcctcctccatagaggagttcgttggatttggcacctaaatcggaacaatttaggtttcatatgttgacgactttgataatgt |
2667685 |
T |
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| Q |
304 |
attccattgattacttcattcaaagccctatg |
335 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2667686 |
attccattgattacttcattcaaagccctatg |
2667717 |
T |
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