View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10896_low_7 (Length: 331)
Name: NF10896_low_7
Description: NF10896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10896_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 12909155 - 12909466
Alignment:
| Q |
15 |
accaaccacaagaaaaaacatcttcaagaattccggtcttcttccttgggatattcaacagcataccgtgtgaaaaggttgcaccagtatgggaataagg |
114 |
Q |
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| T |
12909155 |
accaaccacaagaaaaaacatcttcaagaattccagtcttcttccttgggatattcaacagcataccgtgtgaaaaggttgcaccagtatgggaataagg |
12909254 |
T |
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| Q |
115 |
caacaaattggaatgcagccttgaatttgttatcggagcactgtccgtgagaacaggagtattatttgaattcatgtccataggatccaggttttataag |
214 |
Q |
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| T |
12909255 |
caacaaattggaatgcagccttgaatttgttatcggagcactgtccgtgagaacaggagtatgatttgaattcatgtccataggatccaggttttataag |
12909354 |
T |
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| Q |
215 |
ccaactcagacgcaataacaatttaataagaaactaataattttatcaaatttccacttcaccctactcttttgtcgataaaaaaccacctcttcaatgt |
314 |
Q |
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| T |
12909355 |
ccaactcagacgcaataacaatttaataagaaactaataattttatcaaatttccacttcaccctactcttttgtcgataaaaaaccacctcttcaatgt |
12909454 |
T |
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| Q |
315 |
tttcttctcact |
326 |
Q |
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|||||| ||||| |
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| T |
12909455 |
tttcttgtcact |
12909466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 13309157 - 13308842
Alignment:
| Q |
15 |
accaaccacaagaaaaaacatcttcaagaa-ttccggtcttcttcctt----gggatattcaacagcataccgtgtgaaaaggttgcaccagtatgggaa |
109 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||| ||||||||||| | |||||||||| | ||||||||| |
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| T |
13309157 |
accaaccacaagaaaaaacatcttcaaaaaattccggtcttcttccttccctgggatgttcattagcataccgtgcggaaaggttgcagcggtatgggaa |
13309058 |
T |
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| Q |
110 |
taaggcaacaaattggaatgcagccttgaatttgttatcggagcactgtccgtgagaacaggagtattatttgaattcatgtccataggatccaggtttt |
209 |
Q |
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| T |
13309057 |
taaggcaacaaattgaaatgcagccttgagtttgttatcagagcagtatacgtgagaac-ggaatatgatttggattcatgtccataggatccaggttta |
13308959 |
T |
|
| Q |
210 |
ataagccaactcagacgcaataacaatttaataagaaactaataattttatcaaatttccacttcaccctactcttttgtcgataaaaaaccacctcttc |
309 |
Q |
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| T |
13308958 |
gcaagccaacacacgcacagaaacaatttgataagaaactaatatttttatcagatttcgacttcaccatattcttttgtcgataaaaaaccacctcttc |
13308859 |
T |
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| Q |
310 |
aatgttttcttctcact |
326 |
Q |
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||||||||||| ||||| |
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| T |
13308858 |
aatgttttcttgtcact |
13308842 |
T |
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