View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10898_low_1 (Length: 532)
Name: NF10898_low_1
Description: NF10898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10898_low_1 |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 56069029 - 56069549
Alignment:
| Q |
18 |
aaatagtgtatgacatgacattgtagagaagagacaaggatgat---------gtttgtctggagttaagtatatgctaccaaactgttttattgcttcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069029 |
aaatagtgtatgacatgacattgtagagaagagacaaggatgatagggttcgtgtttgtctggagttaagtatatgctaccaaactgttttattgcttcc |
56069128 |
T |
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| Q |
109 |
acgtggtat--gatcatgtccttgatctttattattatagttacaattcaattggttttaatttcaaacatgaatgaatagttagaagactcaaagaaaa |
206 |
Q |
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| T |
56069129 |
acgtggtatatgatcatgtccttgatctttat---tatagttaaaattcaattggttttaatttcaaacatgaatgaatagttagaagactcaaagaaaa |
56069225 |
T |
|
| Q |
207 |
cgttatcttttgagattgttcacacagtgcataaaatagtactgatcgagttactaagtttgtaaaaatgactgatacgaagcaagccatgtatacaaaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069226 |
cgttatcttttgagattgttcacacagtgcataaaatagtact----gagttactaagtttgtaaaaatgactgatacgaagcaagccatgtatacaaaa |
56069321 |
T |
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| Q |
307 |
agaataataaattatataatggattgca-------------attgacctttattatggatggatgttgcattctcgcaaatacacagaatcataatgaac |
393 |
Q |
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| T |
56069322 |
agaataataaattatataatggattgcaacctataaggtgcattgacctttattatggatggatgttgcattctcgcaaatacacagaatcataatgaat |
56069421 |
T |
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| Q |
394 |
gtacttcgtccaataaccttgaaacttttgaatacttatctcgatccatggtttcatatttccat----tatagtgtgtattacagcagcactttcgata |
489 |
Q |
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| T |
56069422 |
gtacttcgtccaataaccttgaaacttttgaatacttatctcgagccatggtttcatatttccattatatatagtgtgtattacagcagcactttcgata |
56069521 |
T |
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| Q |
490 |
tctttttggttgacatcagggttgtagc |
517 |
Q |
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| T |
56069522 |
tctttttggttgacatcagggttgtagc |
56069549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 56072508 - 56072551
Alignment:
| Q |
137 |
attattatagttacaattcaattggttttaatttcaaacatgaa |
180 |
Q |
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| T |
56072508 |
attattatagttacaattcaattggttgtaatttcaaacatgaa |
56072551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 344 - 517
Target Start/End: Complemental strand, 38398961 - 38398790
Alignment:
| Q |
344 |
tattatggatggatgttgcattctcgcaaatacacagaatcataatgaacgtacttcgtccaataaccttgaaacttttgaatacttatctcgatccatg |
443 |
Q |
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| T |
38398961 |
tattattgattgatattgcattctcgcaaatactcactctcataatcaacatacttcgtccaataacctttaaacttcggtatacttatctccagccacg |
38398862 |
T |
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| Q |
444 |
gtttcatatttccattatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagc |
517 |
Q |
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| T |
38398861 |
gtttcaagtttccgttata--gtgaattacagcagccctttcaatatctttttggttgacattggggttgtagc |
38398790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0446 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 6862 - 6819
Alignment:
| Q |
137 |
attattatagttacaattcaattggttttaatttcaaacatgaa |
180 |
Q |
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| T |
6862 |
attattatagttacaattcaattggttgtaatttcaaacatgaa |
6819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 503
Target Start/End: Complemental strand, 10171266 - 10171115
Alignment:
| Q |
350 |
ggatggatgttgcattctcgcaaatacacagaatcataatgaacgtacttcgtccaataaccttgaaacttttgaatacttatctcgatccatggtttca |
449 |
Q |
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|||| ||||||||||||||||||||| ||| || ||| | || ||||| ||||| |||||| |||||| ||||||||||||| | |||||| |||| |
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| T |
10171266 |
ggattgatgttgcattctcgcaaatagacatgattatagttgacatactttgtccagtaacctctaaacttgggaatacttatctccaaccatggcttca |
10171167 |
T |
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| Q |
450 |
tatttccattatagtgtgtattacagcagcactttcgatatctttttggttgac |
503 |
Q |
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| T |
10171166 |
tgttcccattgta--gtgcataacagcagcccgatcaatatctttttggttgac |
10171115 |
T |
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