View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10899_low_10 (Length: 345)
Name: NF10899_low_10
Description: NF10899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10899_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 17412135 - 17412435
Alignment:
| Q |
19 |
ctgcattcattcataaataggttttcgtgatcaatatattaaacgtgaataatcgaacaatcaatggcaagaatccgatcaagatacctttgtgtacaat |
118 |
Q |
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| T |
17412135 |
ctgcattcattcataaataggttttggtgatcaatatattaaacgtgaataatcgaacaatcaatggcaagaatccgatcaagatacctttgtgtacaat |
17412234 |
T |
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| Q |
119 |
ggttgatacaataattggtatttggcttcaagagctgctctctcctcaaaaaactttgccttcaattcatcatgttctctctgtaaagtcacaaaacaag |
218 |
Q |
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| T |
17412235 |
ggttgatacaataattggtatttggcttcaagagctgctctctcctcaaaaaactttgccttcaaatcatcatgttctttctgtaaagtcacaaaacaag |
17412334 |
T |
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| Q |
219 |
ttcagaagctactaggaaactcgaattcataagaacaatttacagattcatttctttaaaagcaaaaataggttaatgatggacggttaggttcaaacta |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17412335 |
ttcagaagctactaggaaactcgaattcataacaacaatttacagattcatttctttaaaagcaaaaataggttaatgatggacggttaggttcaaacta |
17412434 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
17412435 |
t |
17412435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 17391854 - 17391983
Alignment:
| Q |
97 |
tcaagatacctttgtgtacaatggttgatacaataattggtatttggcttcaagagctgctctctcctcaaaaaactttgccttcaattcatcatgttct |
196 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |
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| T |
17391854 |
tcaagatacctttgtgtacaatggttgatacaatttttggtatttggcttcaagagctgctctctcctccaaaaacttagcctccaattcatcatgttca |
17391953 |
T |
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| Q |
197 |
ctctgtaaagtcacaaaacaagttcagaag |
226 |
Q |
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| T |
17391954 |
ccctgcacagtcataaaacaatttcagaag |
17391983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 17406902 - 17407002
Alignment:
| Q |
101 |
gatacctttgtgtacaatggttgatacaataattggtatttggcttcaagagctgctctctcctcaaaaaactttgccttcaattcatcatgttctctct |
200 |
Q |
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|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
17406902 |
gataccttagcgaacaatggttgatacaataattggtatttggcttcaagagctgctctctcctccaaaaacttttccttcaattcatcatgttctctct |
17407001 |
T |
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| Q |
201 |
g |
201 |
Q |
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| T |
17407002 |
g |
17407002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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