View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10899_low_12 (Length: 250)
Name: NF10899_low_12
Description: NF10899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10899_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26444943 - 26444708
Alignment:
| Q |
1 |
tatggatatgttaatttttatttgagaataattttacgcttaattttacaacattcactacatgcataatactttgtatagttgattaattnnnnnnngg |
100 |
Q |
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| T |
26444943 |
tatgtatatgttaatttttatttgagaataattttacgcttaattttacaacattcactacatgcataatactttgtatagttgattaattaaaaaaggg |
26444844 |
T |
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| Q |
101 |
aattgagacgacaatcatatgatgatatatgttaattaggaggagaaaaaagatcttactaagaatatattgtcaactaaggtatagtccaaatttttat |
200 |
Q |
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| T |
26444843 |
a-ttcagacgacaatcatatgatgatatatgttaattaggaggagaaaaaagatcttactaagaatatattgtcaactaaggtgtaatccaaatttttat |
26444745 |
T |
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| Q |
201 |
agctggca-tttatgcatgatgttttaggagcctatt |
236 |
Q |
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| T |
26444744 |
agctggcattttatgaatgatgttttaggagcctatt |
26444708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8040867 - 8040915
Alignment:
| Q |
1 |
tatggatatgttaatttttatttgagaataattttacgcttaattttac |
49 |
Q |
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| T |
8040867 |
tatgtatatgttaatttttatttgagaataattttacgtttaattttac |
8040915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21501099 - 21501066
Alignment:
| Q |
1 |
tatggatatgttaatttttatttgagaataattt |
34 |
Q |
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| T |
21501099 |
tatgtatatgttaatttttatttgagaataattt |
21501066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 66020 - 65967
Alignment:
| Q |
1 |
tatggatatgttaatttttatttgagaataa-ttttacgcttaattttacaaca |
53 |
Q |
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| T |
66020 |
tatgcatatattaatttttatttgagaataatttttacgcttaattttacaaca |
65967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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