View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10899_low_13 (Length: 244)

Name: NF10899_low_13
Description: NF10899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10899_low_13
NF10899_low_13
[»] chr3 (8 HSPs)
chr3 (1-227)||(26444980-26445206)
chr3 (50-224)||(2353204-2353378)
chr3 (87-222)||(19930008-19930142)
chr3 (111-224)||(9372208-9372321)
chr3 (87-196)||(42253534-42253643)
chr3 (108-216)||(42256809-42256921)
chr3 (110-163)||(19935230-19935283)
chr3 (137-224)||(14658137-14658224)
[»] chr1 (8 HSPs)
chr1 (1-215)||(21501136-21501350)
chr1 (1-104)||(8040728-8040830)
chr1 (111-224)||(43254123-43254236)
chr1 (108-208)||(49387599-49387699)
chr1 (85-220)||(9111511-9111646)
chr1 (124-221)||(38825486-38825584)
chr1 (86-212)||(24981133-24981259)
chr1 (111-218)||(38828683-38828791)
[»] chr2 (7 HSPs)
chr2 (44-208)||(27083019-27083183)
chr2 (15-154)||(66071-66210)
chr2 (108-174)||(10941419-10941484)
chr2 (108-174)||(10947288-10947353)
chr2 (108-163)||(10938058-10938112)
chr2 (117-224)||(18739113-18739221)
chr2 (181-224)||(27107311-27107354)
[»] chr7 (7 HSPs)
chr7 (100-224)||(15569574-15569698)
chr7 (108-224)||(13815746-13815862)
chr7 (87-224)||(2609574-2609711)
chr7 (111-224)||(32352425-32352538)
chr7 (112-212)||(31206623-31206723)
chr7 (86-187)||(22301122-22301224)
chr7 (117-212)||(39426453-39426548)
[»] chr6 (7 HSPs)
chr6 (108-224)||(2936141-2936257)
chr6 (108-199)||(24044926-24045017)
chr6 (132-224)||(3835677-3835769)
chr6 (137-224)||(14579627-14579714)
chr6 (108-202)||(24041623-24041717)
chr6 (101-163)||(19973737-19973799)
chr6 (117-224)||(19697847-19697955)
[»] chr4 (9 HSPs)
chr4 (112-224)||(31767445-31767557)
chr4 (87-224)||(13250497-13250635)
chr4 (111-224)||(43287856-43287970)
chr4 (85-222)||(895453-895590)
chr4 (87-216)||(4747204-4747332)
chr4 (108-174)||(13010526-13010593)
chr4 (111-224)||(43472112-43472224)
chr4 (117-212)||(6667721-6667816)
chr4 (112-212)||(44643473-44643572)
[»] scaffold0028 (2 HSPs)
scaffold0028 (85-224)||(110129-110268)
scaffold0028 (112-224)||(127708-127820)
[»] chr5 (5 HSPs)
chr5 (117-222)||(13291963-13292068)
chr5 (81-211)||(39292120-39292250)
chr5 (130-210)||(26703032-26703113)
chr5 (130-210)||(26972765-26972846)
chr5 (50-212)||(18594835-18594995)
[»] scaffold0076 (1 HSPs)
scaffold0076 (81-224)||(6726-6869)
[»] chr8 (3 HSPs)
chr8 (43-166)||(41739805-41739934)
chr8 (108-163)||(33940435-33940490)
chr8 (117-212)||(1788901-1788996)
[»] scaffold0216 (1 HSPs)
scaffold0216 (181-224)||(12121-12164)
[»] scaffold0293 (1 HSPs)
scaffold0293 (140-212)||(4950-5022)
[»] scaffold0933 (2 HSPs)
scaffold0933 (113-163)||(813-863)
scaffold0933 (181-217)||(1111-1147)
[»] scaffold0002 (1 HSPs)
scaffold0002 (141-224)||(448729-448809)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26444980 - 26445206
Alignment:
Q  1 gataaatttatttgtccttaataattttagatagctagagtactgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataat 100  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26444980 gataaatttatctgtccttactaattttagatagctagagtactgacataactctatcaatatccttcaccaacaactcatatgtaacctgcaaaataat 26445079  T
Q  101 aaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctg 200  Q
    ||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  26445080 aaacggatatataacatgaggcatgacaaagtcactgtccttaaggatttatccgcctcataatcgtatatcctgtcaagatacaacatgttcttccctg 26445179  T
Q  201 atatgaatcatatcagaggtgacataa 227  Q
    ||||||||||||||||||| |||||||    
T  26445180 atatgaatcatatcagaggcgacataa 26445206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 2353378 - 2353204
Alignment:
Q  50 aactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatt 149  Q
    ||||||||||| ||  | |||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||  ||||||  |||||||||||||    
T  2353378 aactctatcaacattctccaccaacaactcatatgtaacctgcaaaataataaaccgttatataacctgaggcatgatgaagtcattgtccttaaggatt 2353279  T
Q  150 tatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    ||||||||||||||  |  ||||||  ||  |||||||| ||||||| |||||||||||||||| ||||||||||    
T  2353278 tatccgcctcataagtgcttatcctcccaggatacaacaggttcttctctgatatgaatcatataagaggtgaca 2353204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 19930008 - 19930142
Alignment:
Q  87 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaa 186  Q
    |||||||||||| |||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||  | | ||||||    
T  19930008 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcaccgtccttaaggatttatccgcctcataagcgcatatcct-cccagatacaa 19930106  T
Q  187 catgttcttccctgatatgaatcatatcagaggtga 222  Q
    ||||||||||||||| |||||||| |||||||||||    
T  19930107 catgttcttccctgagatgaatcacatcagaggtga 19930142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 9372208 - 9372321
Alignment:
Q  111 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 210  Q
    ||||| ||||||||||| ||||||| |||||||||||||||| |||||||||| || ||||| |  ||  |||||||| |||| ||||||||||||||||    
T  9372208 ataacctgaggcatgacgaagtcactgtccttaaggatttattcgcctcataagcgcatatcgtcccaggatacaacaggttcatccctgatatgaatca 9372307  T
Q  211 tatcagaggtgaca 224  Q
    ||| ||||||||||    
T  9372308 tatgagaggtgaca 9372321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 42253534 - 42253643
Alignment:
Q  87 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaa 186  Q
    |||||||||||| |||||   ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| || |||||||   |  ||||||    
T  42253534 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcactgtccttaaggatttacccgcctcataagcgcatatcctccaaggatacaa 42253633  T
Q  187 catgttcttc 196  Q
    ||||||||||    
T  42253634 catgttcttc 42253643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 42256809 - 42256921
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcg----tatatcctggcaaaatacaacatgttcttccctgata 203  Q
    ||||||||||||||| ||||||| |||| ||| |||||||||||||| | |||||| ||    ||||| ||  ||  ||||||||| |||||||||||||    
T  42256809 tatataacatgaggcgtgacaaaatcactgtctttaaggatttatcctcttcataagcgcatatatatactcccaggatacaacatattcttccctgata 42256908  T
Q  204 tgaatcatatcag 216  Q
    ||||||| |||||    
T  42256909 tgaatcacatcag 42256921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 19935230 - 19935283
Alignment:
Q  110 tataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 163  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  19935230 tataatatgaggcgtgacaaagtcactgtccttaaggatttatcctcctcataa 19935283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 14658224 - 14658137
Alignment:
Q  137 gtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    ||||||||||||||||| || |||||| || |||||||  ||  ||||||||  |||||| || | ||||||||| ||||||||||||    
T  14658224 gtccttaaggatttatctgcatcataagcgcatatccttccaggatacaacaaattcttctctaacatgaatcatgtcagaggtgaca 14658137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 21501136 - 21501350
Alignment:
Q  1 gataaatttatttgtccttaataattttagatagctagagtactgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataat 100  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||    
T  21501136 gataaacttatatgttcttaataattttagatagctagagtactgacataactctgtcaatgtccttcaccaacaactcatatgtaacctgcaaaataat 21501235  T
Q  101 aaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctg 200  Q
    ||| |  ||||||| ||||||| |||||||||| |  || ||||||||||||||| |||||||  |||||||||   |  |||||||||||||||| ||     
T  21501236 aaatagttatataatatgaggcgtgacaaagtcgctatctttaaggatttatccgtctcataagtgtatatcctcctaggatacaacatgttcttctcta 21501335  T
Q  201 atatgaatcatatca 215  Q
    |||| ||||||||||    
T  21501336 atataaatcatatca 21501350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 8040830 - 8040728
Alignment:
Q  1 gataaatttatttgtccttaataattttagatagctagagtactgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataat 100  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||    
T  8040830 gataaacttatatgtccttaataattttatatagctagagtactgacataactctgtcaatatc-ttcaccaacaacttatatgtaacttgcaaaataat 8040732  T
Q  101 aaac 104  Q
    ||||    
T  8040731 aaac 8040728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 43254236 - 43254123
Alignment:
Q  111 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 210  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||||||| || |||||||  ||  ||||||||||||||||||  ||||||||||    
T  43254236 ataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcccaggatacaacatgttcttcccatatatgaatca 43254137  T
Q  211 tatcagaggtgaca 224  Q
    ||||||||||||||    
T  43254136 tatcagaggtgaca 43254123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 49387599 - 49387699
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaa 207  Q
    ||||||||||||||| |||||||||||| | |||||||||||||| ||||| |||| || |||||||  ||  |||||||||||||||||||||| ||||    
T  49387599 tatataacatgaggcgtgacaaagtcactggccttaaggatttattcgccttataagcgcatatcctcccaggatacaacatgttcttccctgatgtgaa 49387698  T
Q  208 t 208  Q
    |    
T  49387699 t 49387699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 9111511 - 9111646
Alignment:
Q  85 taacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataatcgtatatcctggcaaaata 183  Q
    |||||||||||||| |||||   |||||||  |||||| ||||| |||||| |||||| |||| |||||||||||||||| || ||||| |  ||  |||    
T  9111511 taacctgcaaaatagtaaactgttatataatctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcttcccaggata 9111610  T
Q  184 caacatgttcttccctgatatgaatcatatcagaggt 220  Q
    ||||| ||||||| ||||||| |||||||||||||||    
T  9111611 caaca-gttcttcactgatataaatcatatcagaggt 9111646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 38825486 - 38825584
Alignment:
Q  124 tgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtg 221  Q
    |||| ||||||| |||||||||||||| |||| |||||||| || |||||||  ||  |||||||| ||||||| ||| |||||||||||||| |||||    
T  38825486 tgacgaagtcactgtccttaaggattttatcctcctcataaacgcatatcctcccaggatacaacaagttcttctctgctatgaatcatatcaaaggtg 38825584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 212
Target Start/End: Original strand, 24981133 - 24981259
Alignment:
Q  86 aacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataatcgtatatcctggcaaaatac 184  Q
    ||||||||||| || | || | ||| |||| |||||| ||||| ||||| ||||||| |||| |||||||||||||||| |  |||||||  ||  ||||    
T  24981133 aacctgcaaaacaaaatactattatgtaacctgaggcgtgacatagtcagcgtccttgaggattttatccgcctcataagcacatatcctcccaggatac 24981232  T
Q  185 aacatgttcttccctgatatgaatcata 212  Q
    |||| ||||||||| | |||||||||||    
T  24981233 aaca-gttcttccccgttatgaatcata 24981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 38828683 - 38828791
Alignment:
Q  111 ataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatc 209  Q
    ||||| |||||| |||| |||||||  ||||||||||||| |||||||| |||| |  ||||| |  ||  ||| |||| ||||||||||  ||||||||    
T  38828683 ataacttgaggcgtgacgaagtcactatccttaaggattttatccgccttataagctcatatcttcccaggataaaacaagttcttccctactatgaatc 38828782  T
Q  210 atatcagag 218  Q
    |||||||||    
T  38828783 atatcagag 38828791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 27083019 - 27083183
Alignment:
Q  44 tgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaa-taataaacaaatatataacatgaggcatgacaaagtcaccgtcctt 142  Q
    |||||| |||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||   ||||||| |||||||||||||||||| | |||||     
T  27083019 tgacatgactctatcaatatccttcaccaacaactca-atgtaacctacaaaaataataaactgttatataagatgaggcatgacaaagtcgctgtcctg 27083117  T
Q  143 aaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaat 208  Q
    |||||||||||||||||| || || |||||||  ||  |||||||| |||||||||| ||||||||    
T  27083118 aaggatttatccgcctcacaagcgcatatcctcccaggatacaacaggttcttccctaatatgaat 27083183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 66071 - 66210
Alignment:
Q  15 tccttaataattttagatagctagagtactgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaatatataa 114  Q
    ||||||||| |||||||||||||| || || |||||||||| |||||||| ||||||||||||||||||||||| |  ||||||||||| |  | |||||    
T  66071 tccttaatatttttagatagctagggtgctaacataactctgtcaatatctttcaccaacaactcatatgtaacttataaaataataaatagttgtataa 66170  T
Q  115 catgaggcatgacaaagtcaccgtccttaaggatttatcc 154  Q
    |||||||| ||| ||||||||  |  ||||||||||||||    
T  66171 catgaggcgtgataaagtcactatatttaaggatttatcc 66210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 10941419 - 10941484
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcct 174  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||| |||||||||| || |||||||    
T  10941419 tatataacatgaggcgtgacaa-gtcactgtccttaaggatttattcgcctcataagcgcatatcct 10941484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 10947288 - 10947353
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcct 174  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||| |||||||||| || |||||||    
T  10947288 tatataacatgaggcgtgacaa-gtcactgtccttaaggatttattcgcctcataagcgcatatcct 10947353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 10938058 - 10938112
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 163  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||    
T  10938058 tatataacatgaggcgtgacaa-gtcactgtccttaaggatttattcgcctcataa 10938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 18739113 - 18739221
Alignment:
Q  117 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcat-atc 214  Q
    |||||| ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||  || ||||||||  ||||||||| | |||||||||| |||    
T  18739113 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccacaatacaac-ggttcttccccgttatgaatcataatc 18739211  T
Q  215 agaggtgaca 224  Q
     |||||||||    
T  18739212 ggaggtgaca 18739221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 27107354 - 27107311
Alignment:
Q  181 atacaacatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    |||||||||||||||||||||| | ||||| |||||||||||||    
T  27107354 atacaacatgttcttccctgatgtaaatcacatcagaggtgaca 27107311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 15569698 - 15569574
Alignment:
Q  100 taaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccct 199  Q
    |||||| ||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |  |||||||  ||  |||||||| ||||||| ||    
T  15569698 taaacatatatataacctgaggcgtgacaaagtcactgtccttagggatttatccgcctcataagcacatatcctcccaggatacaacaggttcttctct 15569599  T
Q  200 gatatgaatcatatcagaggtgaca 224  Q
    |||||||||||||||||||||||||    
T  15569598 gatatgaatcatatcagaggtgaca 15569574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 13815862 - 13815746
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaa 207  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| || ||||| |  ||  ||||||||||||||||||| || ||||    
T  13815862 tatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcttcccaggatacaacatgttcttccctaatgtgaa 13815763  T
Q  208 tcatatcagaggtgaca 224  Q
    ||| |||||||||||||    
T  13815762 tcacatcagaggtgaca 13815746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 2609574 - 2609711
Alignment:
Q  87 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaa 186  Q
    |||||||||||| ||| |   |||||||| |||||| |||| |||||||  |||||||| ||||||| | ||||||| || ||||||| |||  ||||||    
T  2609574 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtatttatctgtctcataagcgcatatcctcgcaggatacaa 2609673  T
Q  187 catgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  2609674 catgttcttctctgatatgaatcatatcagatgtgaca 2609711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 32352425 - 32352538
Alignment:
Q  111 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 210  Q
    |||||| ||||| |||||||||||| |||||||||||||||| |||||||||| || |||||||  ||  | ||||||| |||||| | |||||||||||    
T  32352425 ataacacgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcccaggacacaacatattcttctcagatatgaatca 32352524  T
Q  211 tatcagaggtgaca 224  Q
     |||||||||||||    
T  32352525 catcagaggtgaca 32352538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 31206623 - 31206723
Alignment:
Q  112 taacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 210  Q
    |||| |||||| ||||| |||||| ||| || ||||||| |||| |||||||| || |||||||||||  |||||||| ||||||||| | |||||||||    
T  31206623 taacctgaggcgtgacatagtcactgtctttgaggattttatccacctcataagcgcatatcctggcaggatacaaca-gttcttccccgttatgaatca 31206721  T
Q  211 ta 212  Q
    ||    
T  31206722 ta 31206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 22301122 - 22301224
Alignment:
Q  86 aacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataatcgtatatcctggcaaaatac 184  Q
    ||||||||||| || | || | ||| |||| |||||| ||||| |||||| |||||| |||| |||||||||||||||| || |||||||  ||| ||||    
T  22301122 aacctgcaaaacaaaatactattatgtaacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaagatac 22301221  T
Q  185 aac 187  Q
    |||    
T  22301222 aac 22301224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 39426453 - 39426548
Alignment:
Q  117 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 212  Q
    |||||| ||| | |||||| |||||| ||||||| ||||| ||||||| || |||||||  ||| ||| |||| ||||||||||| |||||||||||    
T  39426453 tgaggcgtgatatagtcactgtccttgaggattttatccgtctcataagcgaatatcctcccaagataaaaca-gttcttccctgttatgaatcata 39426548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 2936141 - 2936257
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaa 207  Q
    ||||||||||||||  |||| ||||||| ||||||||||||||||||||||||||| || ||||| |  ||| |||| ||||||||||| ||||||| ||    
T  2936141 tatataacatgaggtgtgacgaagtcactgtccttaaggatttatccgcctcataagcgcatatcttttcaagataccacatgttcttctctgatataaa 2936240  T
Q  208 tcatatcagaggtgaca 224  Q
    ||| |||||||||||||    
T  2936241 tcacatcagaggtgaca 2936257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 24044926 - 24045017
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccct 199  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| || |||||||  ||  |||||||||||||||||||    
T  24044926 tatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcccaggatacaacatgttcttccct 24045017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 3835677 - 3835769
Alignment:
Q  132 tcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    ||||||||||||||||||||| | |||||||| || |||||||  ||  ||||||||  |||||| ||||||| |||||||||||||||||||    
T  3835677 tcaccgtccttaaggatttattcacctcataagcgcatatcctctcaggatacaacaaattcttctctgatataaatcatatcagaggtgaca 3835769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 14579714 - 14579627
Alignment:
Q  137 gtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    ||||||||||||||||||||||||||| || |||||||  ||  |||||||| ||||||| |||| ||||||||| | ||||||||||    
T  14579714 gtccttaaggatttatccgcctcataagcgaatatcctctcaggatacaacaggttcttctctgacatgaatcatgtaagaggtgaca 14579627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 24041623 - 24041717
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgat 202  Q
    |||||||||| |||| |||||||||||| ||| ||||| |||||| |||||||||| || |||||||   |  ||||||||||||||||||||||    
T  24041623 tatataacataaggcgtgacaaagtcactgtctttaagaatttattcgcctcataagcgcatatcctcctaggatacaacatgttcttccctgat 24041717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 19973799 - 19973737
Alignment:
Q  101 aaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 163  Q
    ||||| || |||||| |||||| |||||||||||| |||||||| ||||||||||||||||||    
T  19973799 aaacatatgtataacctgaggcgtgacaaagtcactgtccttaaagatttatccgcctcataa 19973737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 19697847 - 19697955
Alignment:
Q  117 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcat-atc 214  Q
    |||||| ||||| |||||  |||||| ||||||| ||||||||||||| || |||||||  ||  |||||||| ||||||||| | |||||||||| |||    
T  19697847 tgaggcgtgacatagtcattgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcataatc 19697945  T
Q  215 agaggtgaca 224  Q
     |||||||||    
T  19697946 ggaggtgaca 19697955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 31767445 - 31767557
Alignment:
Q  112 taacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcat 211  Q
    ||||||||||| ||||||| ||||  |||||||||||||||||||||||||| |  |||||||   |  ||||||||||||||||||||||||||||||     
T  31767445 taacatgaggcgtgacaaaatcactatccttaaggatttatccgcctcataagcacatatcctcctaggatacaacatgttcttccctgatatgaatcac 31767544  T
Q  212 atcagaggtgaca 224  Q
    |||||||||||||    
T  31767545 atcagaggtgaca 31767557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 13250497 - 13250635
Alignment:
Q  87 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcc-tggcaaaataca 185  Q
    |||||||||||| ||| |   ||||||||||||||| ||||||||||||  ||||||| ||||||||| |||||||| || |||||| |   |  |||||    
T  13250497 acctgcaaaatagtaagccgttatataacatgaggcgtgacaaagtcactctccttaaagatttatccacctcataagcgcatatccttcttaggataca 13250596  T
Q  186 acatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    | ||||||||||||||||||||||| ||||| |||||||    
T  13250597 atatgttcttccctgatatgaatcacatcagtggtgaca 13250635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 43287970 - 43287856
Alignment:
Q  111 ataacatgaggcatgacaaagtcaccgtccttaa-ggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatc 209  Q
    |||||||||||| |||||||||||| |||||||| |||||||| |||||||||| || ||||| |  ||  ||||||||| |||||| | ||||||||||    
T  43287970 ataacatgaggcgtgacaaagtcactgtccttaaaggatttattcgcctcataagcgcatatctttccaggatacaacatattcttctcagatatgaatc 43287871  T
Q  210 atatcagaggtgaca 224  Q
    | |||||||||||||    
T  43287870 acatcagaggtgaca 43287856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 895590 - 895453
Alignment:
Q  85 taacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaata 183  Q
    |||||||||||||| |||||   ||| |||| |||| | ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||  ||  |||    
T  895590 taacctgcaaaatagtaaactgttatctaacctgagtcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggata 895491  T
Q  184 caacatgttcttccctgatatgaatcatatcagaggtga 222  Q
    ||| | |||||||||| ||||||||||||||||||||||    
T  895490 caaaa-gttcttccctaatatgaatcatatcagaggtga 895453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 4747332 - 4747204
Alignment:
Q  87 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaa 186  Q
    |||||||||| | ||||| | || ||||  |||||| |||| ||||||| ||| ||||||||| ||   |||||||| ||||||||||  ||| ||||||    
T  4747332 acctgcaaaacagtaaaccattaaataatctgaggcgtgacgaagtcactgtc-ttaaggattcatggacctcataagcgtatatcctcccaagatacaa 4747234  T
Q  187 catgttcttccctgatatgaatcatatcag 216  Q
    || ||||||| ||  |||||||||||||||    
T  4747233 caggttcttcgcttgtatgaatcatatcag 4747204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 13010526 - 13010593
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcct 174  Q
    |||||||| |||||| ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||    
T  13010526 tatataacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcct 13010593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 43472224 - 43472112
Alignment:
Q  111 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 210  Q
    |||||||||||  ||||||| |||| ||||||| |||||||| |||||||||| |    |||||   |  |||||||||||||||||| ||| | |||||    
T  43472224 ataacatgaggtgtgacaaaatcactgtccttagggatttattcgcctcataagcacgcatcctcctaggatacaacatgttcttcccagatct-aatca 43472126  T
Q  211 tatcagaggtgaca 224  Q
     |||||||||||||    
T  43472125 catcagaggtgaca 43472112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 6667721 - 6667816
Alignment:
Q  117 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 212  Q
    |||||| ||||| |||||| || ||| ||||||| ||||||||||||| || |||||||  ||  |||||||| ||||||||| | |||||||||||    
T  6667721 tgaggcgtgacatagtcactgttcttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcata 6667816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 44643572 - 44643473
Alignment:
Q  112 taacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcat 211  Q
    |||| |||||| ||||| |||||| |||||| ||  | |||||||||||||| || |||||||   |  |||||||| ||||||||| ||||||||||||    
T  44643572 taacctgaggcgtgacatagtcactgtccttcagattctatccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgatatgaatcat 44643474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 110268 - 110129
Alignment:
Q  85 taacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaata 183  Q
    |||||||||||||| ||| |   ||| ||||||||||| ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||  ||| |||    
T  110268 taacctgcaaaatagtaatctgttatctaacatgaggcgtgacatagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagata 110169  T
Q  184 caacatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    ||||| ||||||| |||||||||||||| ||||||||||||    
T  110168 caaca-gttcttcgctgatatgaatcatgtcagaggtgaca 110129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 127820 - 127708
Alignment:
Q  112 taacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 210  Q
    |||| |||||| ||||| |||||| |||||| ||||||| |||||||||| || || |||||||  ||  |||||||| |||||||||||||||||||||    
T  127820 taacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcagaaacgcatatcctcccatgatacaaca-gttcttccctgatatgaatca 127722  T
Q  211 tatcagaggtgaca 224  Q
    | ||||||||||||    
T  127721 tgtcagaggtgaca 127708  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 13292068 - 13291963
Alignment:
Q  117 tgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcag 216  Q
    ||||||||||| |||| || |||||||| |||||||||||||||||| || |||||||  ||  |||||||| ||| ||| |||||||||||||||||||    
T  13292068 tgaggcatgacgaagttactgtccttaaagatttatccgcctcataagcgcatatcctcccaggatacaacaggttattctctgatatgaatcatatcag 13291969  T
Q  217 aggtga 222  Q
    ||||||    
T  13291968 aggtga 13291963  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 39292250 - 39292120
Alignment:
Q  81 tatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataatcgtatatcctggcaa 179  Q
    |||||||||||||||| ||||||| | ||| |||| |||||  ||| | |||||| ||||||||||| |||||||||||||||| || |||||||  ||     
T  39292250 tatgtaacctgcaaaacaataaaccattatctaacctgaggtgtgatatagtcactgtccttaaggattttatccgcctcataagcgcatatccttccag 39292151  T
Q  180 aatacaacatgttcttccctgatatgaatcat 211  Q
    ||||||||| ||||||| | | ||||||||||    
T  39292150 aatacaaca-gttcttctccgttatgaatcat 39292120  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 26703032 - 26703113
Alignment:
Q  130 agtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 210  Q
    |||||| |||||| ||||||| ||||||||||||| || |||||||  ||| |||||||| ||||||| ||| |||||||||    
T  26703032 agtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatgaatca 26703113  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 26972765 - 26972846
Alignment:
Q  130 agtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 210  Q
    |||||| |||||| ||||||| ||||||||||||| || |||||||  ||| |||||||| ||||||| ||| |||||||||    
T  26972765 agtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatgaatca 26972846  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 18594995 - 18594835
Alignment:
Q  50 aactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtcctt-aaggat 148  Q
    ||||||||||| ||| |  | |||||||||||  ||||||||||||| || | || | ||| |||| |||||| |||||  ||||| |||||| |||  |    
T  18594995 aactctatcaacatcttctatcaacaactcat--gtaacctgcaaaacaaaatactattatgtaacctgaggcgtgacattgtcactgtccttgaagatt 18594898  T
Q  149 ttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 212  Q
    ||||||||||||||| || |||| ||  ||  |||||||| ||||||||| | |||||||||||    
T  18594897 ttatccgcctcataagcgcatattctcacaggatacaaca-gttcttccccgttatgaatcata 18594835  T

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Target: scaffold0076 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 6726 - 6869
Alignment:
Q  81 tatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaa 179  Q
    |||||||||||||||| ||||||| | ||| |||  |||||| ||||| |||||| ||| || ||||||| |||||||||||||  | |||||||  ||     
T  6726 tatgtaacctgcaaaacaataaaccattatctaaactgaggcgtgacatagtcactgtcattgaggattttatccgcctcataagtgcatatccttccat 6825  T
Q  180 aatacaacatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
     |||||||| ||| ||||||||||||||||||||||||| |||||    
T  6826 gatacaaca-gtttttccctgatatgaatcatatcagagatgaca 6869  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 41739805 - 41739934
Alignment:
Q  43 ctgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaata------tataacatgaggcatgacaaagtcacc 136  Q
    ||||||| |||||||||||||  ||||| |||||||||||| |||||||||||||| ||||||  ||      |||||| |||||| |||  |||||||     
T  41739805 ctgacatgactctatcaatattcttcactaacaactcatatctaacctgcaaaatagtaaacagttatgtaattataacctgaggcgtgatgaagtcact 41739904  T
Q  137 gtccttaaggatttatccgcctcataatcg 166  Q
     |||||||||||||||||| ||||||||||    
T  41739905 atccttaaggatttatccgtctcataatcg 41739934  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 33940435 - 33940490
Alignment:
Q  108 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 163  Q
    |||||||| |||||| |||| ||||||| ||||||||||||||||||| |||||||    
T  33940435 tatataacctgaggcttgacgaagtcactgtccttaaggatttatccgtctcataa 33940490  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 1788901 - 1788996
Alignment:
Q  117 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 212  Q
    |||||| ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||  ||  |||||||| ||||||||| | |||||||||||    
T  1788901 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcata 1788996  T

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Target: scaffold0216 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 12164 - 12121
Alignment:
Q  181 atacaacatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    |||||||| |||||||||| ||||||||||||||||||||||||    
T  12164 atacaacaagttcttcccttatatgaatcatatcagaggtgaca 12121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 4950 - 5022
Alignment:
Q  140 cttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 212  Q
    |||||||||||||| ||||||||| |  |||||||  ||| |||||||| |||||||  ||||||||||||||    
T  4950 cttaaggatttatctgcctcataagcacatatcctcccaagatacaacaggttcttctatgatatgaatcata 5022  T

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Target: scaffold0933 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 863 - 813
Alignment:
Q  113 aacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 163  Q
    |||||||||| |||||||||||| ||||||| | |||| ||||||||||||    
T  863 aacatgaggcgtgacaaagtcactgtccttaggtatttttccgcctcataa 813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 1111 - 1147
Alignment:
Q  181 atacaacatgttcttccctgatatgaatcatatcaga 217  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  1111 atacaacatgttcttccctaatatgaatcacatcaga 1147  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 448809 - 448729
Alignment:
Q  141 ttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 224  Q
    |||| |||||||| |||||||||||| |||||||  |   |||||||||||||   ||| ||||||||||||||| ||||||||    
T  448809 ttaaagatttatctgcctcataatcgcatatcctctcgggatacaacatgttc---cctaatatgaatcatatcaaaggtgaca 448729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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