View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10899_low_2 (Length: 517)
Name: NF10899_low_2
Description: NF10899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10899_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 269 - 504
Target Start/End: Complemental strand, 48129674 - 48129439
Alignment:
| Q |
269 |
gagtatttggtatccaatactactttatgttttgttttctttgcattattacatgatcaatgttactatattgttctaacactatttttctacaatttcc |
368 |
Q |
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| T |
48129674 |
gagtatttggtatccaatactactttatgtttttttttctttgcattattacatgatcaatgttactatattgttctaacactatttttctacaatttcc |
48129575 |
T |
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| Q |
369 |
aggaatgtcctttccttgaagatatcatctctgaatgttgaggttcttcttccatagagttcacctaatatacttctcttttattttccgagtgccaaat |
468 |
Q |
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| T |
48129574 |
aggaatgtcctttccttgaagatatcatctctgaatgttgaggttcttcttccatagagttcacctaatatacttctcttttatttttcgagtgccaaat |
48129475 |
T |
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| Q |
469 |
tctttaagatattccacatttcctcaacatcatgat |
504 |
Q |
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| T |
48129474 |
tctttaagatattccacatttcctcaacatcatgat |
48129439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 48129935 - 48129747
Alignment:
| Q |
1 |
ttttttatttggaattgatgttagctttattacaaaatttccttgccatgttctattgatcctaatttcactgcttttgctaagctttattcactgcacc |
100 |
Q |
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| T |
48129935 |
ttttttatttggaattgatgttagctttattacaaaatttccttgccatgttctattgatcctaatttcactgcttttgctaagctttattcactgcacc |
48129836 |
T |
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| Q |
101 |
ttaccaataaattataatcactagaccatgttacaaaagtatacagtcatagctaagcatagttgtgaaattgaagtccattgtacctcaatatct |
196 |
Q |
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| T |
48129835 |
ttacca-------ataatcactagaccatgttacaaaagtatacagtcatagctaagcatagttgtgaaattgaagtccattgtacctcaatatct |
48129747 |
T |
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