View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10899_low_5 (Length: 426)
Name: NF10899_low_5
Description: NF10899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10899_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 41075134 - 41074813
Alignment:
| Q |
13 |
cacagacatgcttaaaaaccaccaaataatccaagcatacaagctctcgttgaatataattcatactacaatgagcactcttcaccagcacaccaatcac |
112 |
Q |
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| T |
41075134 |
cacagacatacttaaaaatcaccaaataatccaagcatacaagctctcgttaaatataattcatactacaatgagcactcttcaccagcacaccaatcac |
41075035 |
T |
|
| Q |
113 |
tccaagtatttgcattcaaactactactaaactgtgtcaacactactggcaaatcagaatatgtaccctactgcaagcacctcagagaataccatcacca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41075034 |
tccaagtatttgcattcaaactactactaaactgtgtcaacactactggcaaatcagaatatgtaccctactgcaagcacctcagagaatactatcacca |
41074935 |
T |
|
| Q |
213 |
tattaacttccagagtcctgatcctcgaaggtatatcaactaggaactgcccgtttacaaaatcagcaacatggcacaaaacacagcagtattccagagc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074934 |
tattaacttccagagtcctgatcctcgaaggtatatcaactaggaactgcctgtttacaaaatcagcaacatggcacaaaacacagcagtattccagagc |
41074835 |
T |
|
| Q |
313 |
agaaaactttcaatgacataaa |
334 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41074834 |
agaaaactttcaatgacataaa |
41074813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 41086622 - 41086228
Alignment:
| Q |
18 |
acatgcttaaaaaccaccaaataatccaagcatacaagctctcgttgaatataattcatactacaatgagcactcttcaccagcacaccaatcactccaa |
117 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
41086622 |
acatacttaaaaactaccaaataatccaagcatacaaactctggttaaatataatacataatacaatgagcactcttcaccagcacaccaatcacttcaa |
41086523 |
T |
|
| Q |
118 |
gtatttgcattcaaactactactaaactgtgtcaacactactggcaaatcagaatatgtaccctactgcaagcacctcagagaataccatcaccatatta |
217 |
Q |
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||||||||||||||||| ||||| |||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
41086522 |
gtatttgcattcaaactgctactgaactgtgttaacaatactggcaaatcagaacatgtactctactgcaagcacctcagagaatactatcaccatatta |
41086423 |
T |
|
| Q |
218 |
acttccagagtcctgatcctcgaaggtatatcaactaggaactgcccgtttacaaaatcagcaacatggcacaaaacacagcagtattccagagcagaaa |
317 |
Q |
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||| ||||||||| |||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| ||||| |||| |||||||||||| |
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| T |
41086422 |
actaccagagtcccaatcctccaaggtatatcaactgggaacatccaatttacaaaatcagcaacatggcacaggacacaacagtgctccagagcagaac |
41086323 |
T |
|
| Q |
318 |
actttcaatgacataaactcaccattagatccacaatcatca---ttgtttcagtttagtgacaacaaacattctgctatttccagccaaaaccat |
410 |
Q |
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|| ||| |||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||| |
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| T |
41086322 |
acattccatgacataaactcagcattagatccgcaatcatcaaatttgtttcagtttagcgacaacaatcattct-ttatttccagccaaaaccat |
41086228 |
T |
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