View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10899_low_6 (Length: 421)
Name: NF10899_low_6
Description: NF10899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10899_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 379653 - 379244
Alignment:
| Q |
10 |
agatgaatatattgaaatatgagatttgaattgcaagtgttgaatatggcaatgtgttaatctcttgatgatggtaggtgagcacaaacacatcatacgg |
109 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
379653 |
agatgaatatattgaaatatgagattcgaattgcaagtgttgaatatggcaatgtgttaatctcttgatgatggtaggtgagcacaaacacatcatacgg |
379554 |
T |
|
| Q |
110 |
accaccacaatattgatccattggttgtggctcctcctcctagaccacaacgactcatcatcatgacatccgtcgcctcctccgccgccacatggtgctg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
379553 |
accaccacaatattgatccattggttgtggctcctcctcctagaccacaacgactcatcatcatgacatccgtcgcctcctccgcctccacatggtgctg |
379454 |
T |
|
| Q |
210 |
gtggggttcaagctcattcaactaaggtggtccagatcaggggcagatcttcttaggagtccatggtagccatggctccccctaaatatggtattaatat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
379453 |
gtggggttcaagctcattcaactaaggtggtccagatcaggggcaaatcttcttaggagtccatggtaaccatggctccccccaaatatggtattaatat |
379354 |
T |
|
| Q |
310 |
tgtatcaatcatacttaatcaggcttttcatatgtgtcgcaatggaaactaaaagctctatgtatcaagtggtcgtgagttcgaacgaaatgaaacacca |
409 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
379353 |
tgtatcatgcatacttaatgaggcttttcatatgtgtcgcaatggaaactaaaagcgctatgtatcaagtggtcgtgagttcgaacggaatgaaccacca |
379254 |
T |
|
| Q |
410 |
caacacatta |
419 |
Q |
| |
|
|||||||||| |
|
|
| T |
379253 |
caacacatta |
379244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 10574361 - 10574315
Alignment:
| Q |
247 |
caggggcagatcttcttaggagtccatggtagccatggctcccccta |
293 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
10574361 |
caggggcggatcttcttgggagcccatggtagccatggctcccccta |
10574315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 42148821 - 42148764
Alignment:
| Q |
253 |
cagatcttcttaggagtccatggtagccatggctccccctaaatatggtattaatatt |
310 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| |||| | ||||| ||||| |
|
|
| T |
42148821 |
cagatcttcttaagagcccatggtagccatggctccccccaaatttcgtatttatatt |
42148764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University