View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10899_low_9 (Length: 356)
Name: NF10899_low_9
Description: NF10899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10899_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 114 - 339
Target Start/End: Original strand, 4196762 - 4196990
Alignment:
| Q |
114 |
tcttaggttaccgtttagtttatcaaaatgagtgttaacttttgtt---gaacaaaaatcaggtttaactttacttgctaatacgaagagagtacacttt |
210 |
Q |
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| T |
4196762 |
tcttaggttaccgtttagtttatcaaaatgagtgttaacttttgttactgaacaaaaatcagggttaactttacttgctaatacgaagagagtatacttt |
4196861 |
T |
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| Q |
211 |
taaattgaacaattgtattactgtaaatatgctctctcaaataaaaaacttgtattattgtatgcatttttctgcaaacaatgaatataccaaaatataa |
310 |
Q |
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| T |
4196862 |
taaattgaacaattgtattactgtaaatatgctctctcaaataaaaaacttgtattattgtatgcatttttctgcaaacaatgaatataccaaaatataa |
4196961 |
T |
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| Q |
311 |
tatttatattatttttggaaatgcatcat |
339 |
Q |
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| T |
4196962 |
tatttatattatttttggaaatgcatcat |
4196990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4196650 - 4196731
Alignment:
| Q |
1 |
aaagatgcaacaatcactcaacctttnnnnnnnnncactacacgaagaaaacagctagaatatgattcaaatgggacaattag |
83 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196650 |
aaagatgcaacaatcactcaacctttaaaaaaaa-cactacacgaagaaaacagctagaatatgattcaaatgggacaattag |
4196731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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