View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10900_high_1 (Length: 413)
Name: NF10900_high_1
Description: NF10900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10900_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 29006590 - 29006204
Alignment:
| Q |
9 |
atgaacttctccaaatcatttttaatgggtatacatgtaacatataggtaggtttaattgataaatagttgattcatggtccttaaagggagtaggttca |
108 |
Q |
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| T |
29006590 |
atgaaattctccaaatcatttttaatgggtaaacatgtaacatataggttggtttaattgataaatagttgattcatggtccttaaagggagtagattca |
29006491 |
T |
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| Q |
109 |
actcccatccccttcgtcaggactctaaatcttgattcatgccattgctagtttgcttcaacttgttcctattctatagcttcaggtccacacaacatac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006490 |
actcccatccccttcgtcaggactctaaatcttgattcatgccattgctagtttgcttcaacttgttcctattctatagcttcaggtccacacaacatac |
29006391 |
T |
|
| Q |
209 |
ttgtgccataacaacgtgtccaagcattttgtgagttgtttccattagtgtttaataagaaaagagacatgtcatttataatggcaaacatgattgagtc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006390 |
ttgtgccataacaacgtgtccaagcattttgtgagttgtttccattagtgtttaataagaaaagagacatgtcatttataatggcaaacatgattgagtc |
29006291 |
T |
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| Q |
309 |
ttattcttaggtcatctacctagcacattcttcttaatgaatatttagacattattatcaccataaacaacaggtatgtagacaact |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006290 |
ttattcttaggtcatctacctagcacattcttcttaatgaatatttagacattattatcaccataaacaacaggtatgtagacaact |
29006204 |
T |
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