View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10901_high_11 (Length: 358)
Name: NF10901_high_11
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_high_11 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 7246324 - 7246474
Alignment:
| Q |
19 |
gtaattgattgagagtaatagtaagggtttaaagaagagttttgataggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagtagaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7246324 |
gtaattgattgagagtaatagtaagggtttaaagaagagttttggtaggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagtagaga |
7246423 |
T |
|
| Q |
119 |
aagggaaagaagaaggtgagtttatgctgctgctgttgttgttcaaggaga |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7246424 |
aagggaaagaagaaggtgagtttatgctgctgctgttgttgttcaaggaga |
7246474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 227 - 345
Target Start/End: Original strand, 7246532 - 7246650
Alignment:
| Q |
227 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7246532 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca |
7246631 |
T |
|
| Q |
327 |
tctccatttcttgccatct |
345 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7246632 |
tctccatttcttgccatct |
7246650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 13137222 - 13137278
Alignment:
| Q |
243 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactt |
299 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||||||||||| | |||||| ||||| |
|
|
| T |
13137222 |
ttccacaagctttcttgaacgatttcgacctctgtgcatgtgacgttcacaatactt |
13137278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 52052075 - 52051973
Alignment:
| Q |
243 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
342 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
52052075 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctccatttctttcca |
52051976 |
T |
|
| Q |
343 |
tct |
345 |
Q |
| |
|
||| |
|
|
| T |
52051975 |
tct |
52051973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 18199801 - 18199903
Alignment:
| Q |
243 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
342 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||||||||| || ||| |
|
|
| T |
18199801 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctccatttttttcca |
18199900 |
T |
|
| Q |
343 |
tct |
345 |
Q |
| |
|
||| |
|
|
| T |
18199901 |
tct |
18199903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 42092016 - 42091957
Alignment:
| Q |
241 |
agttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtacttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
42092016 |
agttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt |
42091957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 399189 - 399100
Alignment:
| Q |
243 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctcca |
332 |
Q |
| |
|
|||||||||||||||||||||||| | || | ||||||||| | ||||||||||| |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
399189 |
ttccacaggctttcttgaacggttgcggccacggtgcatgtggcgctcacagtacttggagtctgggtatgcttccttcgagcacctcca |
399100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University