View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10901_high_13 (Length: 306)
Name: NF10901_high_13
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 41766433 - 41766168
Alignment:
| Q |
19 |
cacagaaatcatcaaaaagtcatcacttttatttttcattccaaacaacattgaattgagttaataaacatttagatcatcctcaaaattgtaaatacga |
118 |
Q |
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| T |
41766433 |
cacagaaatcatcaaaaagtcatcacttttatttttcattccaaacaacattgaatt-----aataaacatttagatcatcctcaaaattgtaaatacta |
41766339 |
T |
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| Q |
119 |
gacaattggtcccaaattacacgaaatgaaaattagtccttgaacttaaagatcgtcaatcaattcagtcattttgtcgtttaatagatcagaaatattg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41766338 |
gacaattggtcccaaattacacgaaatgaaaattagtccttgaacttaaagatcgtcaatcaattcagtcattctgtcgtttaatagatcagaaatattg |
41766239 |
T |
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| Q |
219 |
agttaacatgttatgacatttagctccagcatgtatctaataatttgtttataacttatattgatctctat |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41766238 |
agttaacatgttatgacatttagctccagcatgtatctaataatttgtttataacttatattgatctctat |
41766168 |
T |
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