View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10901_high_15 (Length: 265)
Name: NF10901_high_15
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 47886956 - 47886698
Alignment:
| Q |
1 |
attctgtatgcttcaagcatttgaaaattgttattgtattgcagaatgttgcttttggtgttaatataatcgagaacagcaatctggacaatggcactaa |
100 |
Q |
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| T |
47886956 |
attctgtatgcttcaagcatttgaaaattgttattgtattgcagaatgttgcttttggtgttaatataatcgagaacagcaatctggacaatggcactaa |
47886857 |
T |
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| Q |
101 |
cgggtggtctcctcttggtaattgtactttgagcgttggaacaggttcaccccgtgttattccaccaatggcaagagactctctcggtcctcatgaaccc |
200 |
Q |
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| T |
47886856 |
cgggtggtctcctcttggtaattgtactttgagcgtcggaacaggttcaccccgtgttattccaccaatggcaagagactctctcggtcctcatgaaccc |
47886757 |
T |
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| Q |
201 |
ctgagtggacgttacattcttgtaaccaatcgcacacaaacatatatgggttcttctca |
259 |
Q |
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| T |
47886756 |
ctgagcggacgttacattcttgtaaccaatcgcacacaaacatatatgggtccttctca |
47886698 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 4622318 - 4622361
Alignment:
| Q |
42 |
cagaatgttgcttttggtgttaatataatcgagaacagcaatct |
85 |
Q |
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| T |
4622318 |
cagaatgttgcttttggagttaatataattgagaacagcaatct |
4622361 |
T |
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