View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10901_high_17 (Length: 254)
Name: NF10901_high_17
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 746439 - 746201
Alignment:
| Q |
1 |
aatatattaatctctacatgaacaaccactaaaaaatggatatctagatctataacaataattaaaaattgtaaatttaatcattgacaataattaaaaa |
100 |
Q |
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| T |
746439 |
aatatattaatctctacatgaacaaccactaaaaaatggatatttagatctataacaataattaaaaattgtaaatttaatcattgacaataattaaaaa |
746340 |
T |
|
| Q |
101 |
gagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaatgcaccactat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
746339 |
gagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaatgcaccactat |
746240 |
T |
|
| Q |
201 |
gatgttaatggttccgtaccacttccaagctaggttttt |
239 |
Q |
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| T |
746239 |
gatgttaatggttccgtaccacttccaagctaggttttt |
746201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 711062 - 710824
Alignment:
| Q |
1 |
aatatattaatctctacatgaacaaccactaaaaaatggatatctagatctataacaataattaaaaattgtaaatttaatcattgacaataattaaaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
711062 |
aatatattaatctctacatgaacaaccactaaaaaatggatatttagatctataacaataattaaaaattgtaaatataatcattgacaataattaaaaa |
710963 |
T |
|
| Q |
101 |
gagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaatgcaccactat |
200 |
Q |
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| T |
710962 |
gagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaatgcaccactat |
710863 |
T |
|
| Q |
201 |
gatgttaatggttccgtaccacttccaagctaggttttt |
239 |
Q |
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| T |
710862 |
gatgttaatggttccgtaccacttccaagctaggttttt |
710824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 739347 - 739585
Alignment:
| Q |
1 |
aatatattaatctctacatgaacaaccactaaaaaatggatatctagatctataacaataattaaaaattgtaaatttaatcattgacaataattaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
739347 |
aatatattaatctctacatgaacaaccactaaaaaatggatatttagatctataacaataattaaaaattgtaaatataatcattgacaataattaaaaa |
739446 |
T |
|
| Q |
101 |
gagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaatgcaccactat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
739447 |
gagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaatgcaccactat |
739546 |
T |
|
| Q |
201 |
gatgttaatggttccgtaccacttccaagctaggttttt |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
739547 |
gatgttaatggttccgtaccacttccaagctaggttttt |
739585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 36573118 - 36573180
Alignment:
| Q |
52 |
ataacaataattaaaaattgtaaatttaatcattgacaataattaaaaagagataatttagtt |
114 |
Q |
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||||||||||||||||| | |||||| ||||||||||||||| ||| |||| ||||||||| |
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| T |
36573118 |
ataacaataattaaaaagagacaatttagtcattgacaataattgaaacgagacaatttagtt |
36573180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 12050690 - 12050726
Alignment:
| Q |
74 |
aatttaatcattgacaataattaaaaagagataattt |
110 |
Q |
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| T |
12050690 |
aattttatccttgacaataattaaaaagagataattt |
12050726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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