View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10901_high_21 (Length: 241)
Name: NF10901_high_21
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4270981 - 4270759
Alignment:
| Q |
1 |
ttttttcttcttcttcctaagtgagatgttataataaagtgannnnnnnnnnatcatgtgctcggtgccagtaccgcatctatatctatatttatatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4270981 |
ttttttcttcttcttcctaagtgagatgttataataaagtgattttttttt-atcatgtgctcggtgccagtaccgcatctatatctatatttatatcca |
4270883 |
T |
|
| Q |
101 |
tgtatagtagccagtaaccttctattgatcacattgacatatccatattctctctagtttctggtattttctattccactaccactaagtgcaagtatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4270882 |
tgtatagtagccagtaaccttctattgatcacattgatatatccatattctctctagtttctggtattttctattccactaccactaagtgcaagtatta |
4270783 |
T |
|
| Q |
201 |
gttgacatccatattctctctagt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
4270782 |
gttgacatccatattctctctagt |
4270759 |
T |
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