View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10901_high_24 (Length: 213)
Name: NF10901_high_24
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 36171013 - 36170831
Alignment:
| Q |
15 |
gacatcaagatagagattaagaactttttgttacctgaatttccctcttctggatcaagcaattgcagaagcagggctatgttatgatcatcttgaacaa |
114 |
Q |
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| T |
36171013 |
gacattaagatagagattaagaactttttgttacctgaatttccctcttctggatcaagcaattgcagaagcagggctatgttatgatcatcttgaacaa |
36170914 |
T |
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| Q |
115 |
acctctttctatttctaggtaccgtgaccatgccggagagtgcttcagctgccatttcgcgaacttcaaatgatttcgcattg |
197 |
Q |
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| T |
36170913 |
acctctttctatttctaggtaccgtgaccatgccggagagtgcttcagctgccatttcgcgaacttcaaatgatttcgcattg |
36170831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 1286029 - 1286211
Alignment:
| Q |
15 |
gacatcaagatagagattaagaactttttgttacctgaatttccctcttctggatcaagcaattgcagaagcagggctatgttatgatcatcttgaacaa |
114 |
Q |
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| T |
1286029 |
gacattaagatagagattaagaactttttgttacctgaatttccctcttctggatcaagcaattgcagaagcagggctatgttatgatcatcttgaacaa |
1286128 |
T |
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| Q |
115 |
acctctttctatttctaggtaccgtgaccatgccggagagtgcttcagctgccatttcgcgaacttcaaatgatttcgcattg |
197 |
Q |
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| T |
1286129 |
acctctttctatttctaggtactgtgactatgccggagagtgcttcagctgccatttctcgaacttcaaatgatttcgcattg |
1286211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 569570 - 569628
Alignment:
| Q |
30 |
attaagaactttttgttacctgaatttccctcttctggatcaagcaattgcagaagcag |
88 |
Q |
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| T |
569570 |
attaagaactttttgttacctgtatgttcctcttctagatcaagcaattgcagcagcag |
569628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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