View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10901_high_5 (Length: 512)
Name: NF10901_high_5
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 21 - 493
Target Start/End: Complemental strand, 36170848 - 36170376
Alignment:
| Q |
21 |
tcaaatgatttcgcattgagaaacttaacaaattctgccataaaaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170848 |
tcaaatgatttcgcattgagaaacttaacaaattctaccataaaaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatg |
36170749 |
T |
|
| Q |
121 |
ccactttcaaagccaactcttgaatcgaaacttcaccgtgtcgaacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagct |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170748 |
ccactttcaaagctaactcttgaatcgaaacttcaccgtgtcgaacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagct |
36170649 |
T |
|
| Q |
221 |
agatgaagtaaaacacaaactttcaatagccctcattgttatttcctttgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacgg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170648 |
agatgaagtaaaacacaaactttcaatagccctcattgttatttcctttgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacgg |
36170549 |
T |
|
| Q |
321 |
attccgccttctctaatcaccgtttgcctaaccaactcatctccaaaggcaatattctgaatgaaccctattgaattcacctgaattgcttcctcctttg |
420 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170548 |
attccgccttctctaatcaccatttgcctaaccaactcatctccaaaggcaatattctgaatgaaccctattgaattcacctgaattgcttcctcctttg |
36170449 |
T |
|
| Q |
421 |
atttcactagcctgataaaagtcgacaccgcatcctcctcaaccataaatctcttaacttcctcaacaccaac |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36170448 |
atttcactagcctgataaaagtcgacaccgcatcctcctcaaccatgaatctcttaacttcctcaacaccaac |
36170376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 1286194 - 1286394
Alignment:
| Q |
21 |
tcaaatgatttcgcattgagaaacttaacaaattctgccataaaaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286194 |
tcaaatgatttcgcattgagaaacttaacaaattcttccataaaaccggcatctcccattgctttcttagcttcttcggatgttccagataatctaaatg |
1286293 |
T |
|
| Q |
121 |
ccactttcaaagccaactcttgaatcgaaacttcaccgtgtcgaacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286294 |
ccactttcaaagccaactcttgaatcgaaacttcaccgtgtcgaacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagct |
1286393 |
T |
|
| Q |
221 |
a |
221 |
Q |
| |
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| |
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|
| T |
1286394 |
a |
1286394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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