View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10901_low_1 (Length: 1044)
Name: NF10901_low_1
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 319 - 866
Target Start/End: Original strand, 32532004 - 32532551
Alignment:
| Q |
319 |
tactgtattatgttcattgaagaaggaagacctttaaccatgcacaattccacatattacatgtaatcttccattaatatttaaggcggtaagatcgaca |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32532004 |
tactgtattatgttcattgaagaaggaagacctttaaccatgcacaattccacatattacatgtaatcttccattaatatttaaggcggtaagatcgaca |
32532103 |
T |
|
| Q |
419 |
ggaaaaatacaaagagcaagcaacataccagnnnnnnnccaggaacaattcctctgtaaaatgcactgaatccttcttccctctttatggttctaaatgc |
518 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32532104 |
ggaaaaatacaaagagcaagcaacataccagaaaaaaaccaggaacaattcctctgtaaaatgcactgaatccttcttccctctttatggttctaaatgc |
32532203 |
T |
|
| Q |
519 |
atctgatattcgattatacagataaaataacatcatggcaggttcgcaattggtataaatgatgaatataaccacagcatgatttgggtgagagggataa |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32532204 |
atctgatattcgattatacagataaaataacatcatggcaggttcgcaattggtataaatgatgaatataaccacagcatgatttgggtgagagggataa |
32532303 |
T |
|
| Q |
619 |
acgtccccaccaagtgtaaagagttcaaaatatatagctaatgtaagatggagttcagaccatatagcccagaatatggccgtgcatgaagaagaggcgt |
718 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32532304 |
acgtccccgccaagtgtaaagagttcaaaatatatagctaatgtaagatggagttcagaccatatagcccagaatatggccgtgcatgatgaagaggcgt |
32532403 |
T |
|
| Q |
719 |
ctgaagctgcaaccttgtcttcactacaaaagcaggatttgcgcacaagcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaattcagttctg |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32532404 |
ctgaagctgcaaccttgtcttcactacaaaagcaggatttgcgcacaagcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaattcagttctg |
32532503 |
T |
|
| Q |
819 |
ccacattcatgaatgtgccacagtatgattggttggttttggatccct |
866 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32532504 |
ccacattcatgaatgtgccacagtatgattggttggttttggatccct |
32532551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 32531676 - 32531827
Alignment:
| Q |
14 |
cacagatcaccaaccactctagtatcaaaggctcaaataccatctcatggaccataaatgattttatacctctaactaagatgttgatgataatgataga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32531676 |
cacagatcaccaaccactctagtatcaaaggctcaaataccatctcatggaccataaatgattttatacctctaactaagatgttgatgataatgataga |
32531775 |
T |
|
| Q |
114 |
ggtaatgagctaggtcacgtgaattttaaatttttgacgaaattgttaccaa |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32531776 |
ggtaatgagctaggtcacgtgaattttaaatttttgacgaacttgttaccaa |
32531827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 905 - 1026
Target Start/End: Original strand, 32532552 - 32532673
Alignment:
| Q |
905 |
tatgcacacagataagatagtagtgatgtatgttagttccatccttacacaatattcaagcaacaattttcatcagggaattcatctatacataccaaaa |
1004 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32532552 |
tatgcacacagataagatagtagtgatgtatgttagttccatccttacacgatattcaagcaacaattttcatcagggaattcatctatacataccaaaa |
32532651 |
T |
|
| Q |
1005 |
gcatttaatcgtatcacttctc |
1026 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
32532652 |
gcatttaatcgtatcacttctc |
32532673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 32531903 - 32532005
Alignment:
| Q |
161 |
accaattcatactatgacatgtgttttagtcatatgacaataaaatgacaaataaattctgtaacgtttagcagaaattgaatgaaggatccactgtgtt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32531903 |
accaattcatactatgacatgtgttttagtcatatgacaataaaatgacaaataaattctgtaacgtttagcagaaattgaatgaaggatccactgtgtt |
32532002 |
T |
|
| Q |
261 |
gta |
263 |
Q |
| |
|
||| |
|
|
| T |
32532003 |
gta |
32532005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 358 - 595
Target Start/End: Original strand, 32520256 - 32520486
Alignment:
| Q |
358 |
atgcacaattccacatattacatgtaatcttccattaatatttaaggcggtaagatcgacaggaaaaatacaaagagcaagcaacataccagnnnnnnnc |
457 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||| |||| | | |||||| ||||||||||||| |||||| ||||||||||||| | |
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|
| T |
32520256 |
atgcacaattccacatattatatataatcttccgttataattttcagtgttaagattgacaggaaaaataacaagagccagcaacataccaga------c |
32520349 |
T |
|
| Q |
458 |
caggaacaattcctctgtaaaatgcactgaatccttcttccctctttatggttctaaatgcatctgatattcgattatacagataaaataacatcatggc |
557 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| | ||||||| |
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| T |
32520350 |
caggaacaatccctctgtaaagtgcactaaatccttcttccctctttatggtcctaaatgcatctgatattttattttacagataaaaatatgtcatggc |
32520449 |
T |
|
| Q |
558 |
aggttcgcaattggtataaatgatgaatataaccacag |
595 |
Q |
| |
|
|||| ||||||||||| | |||| ||||||||||||| |
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| T |
32520450 |
tggttagcaattggtat-attgataaatataaccacag |
32520486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 640 - 928
Target Start/End: Original strand, 32547782 - 32548072
Alignment:
| Q |
640 |
agttcaaaatatatagctaatgtaagatggagttcagaccatatagcccagaatatggccgtgcatgaagaagaggcgtctgaagctgcaaccttgtctt |
739 |
Q |
| |
|
|||||| |||||| || || |||||||||||| || ||||||||||||||| |||||||||| ||| ||| ||| ||||||||||| || |||||||| |
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|
| T |
32547782 |
agttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatgaataggagtctgaagctgtaatcttgtctt |
32547881 |
T |
|
| Q |
740 |
cactacaaaagcaggatttgcgcacaagcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaattcagttc-tgcca-cattcatgaatgtgcc |
837 |
Q |
| |
|
||||| || ||||||||| | ||||| ||||||||||| |||||||||||| |||||||||| | |||| || || || |||||| |||||| || |
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|
| T |
32547882 |
cactagccaaacaggatttgtgaacaaggaaacctgacaataggtgaaggaaattaaaatgattgcaggttcatatcttgacaccattcaggaatgtacc |
32547981 |
T |
|
| Q |
838 |
acagtatgattggttggttttggatccctaaacatccaactttgaaagctaagaaatatctcaaatatatgcacacagataagatagtagt |
928 |
Q |
| |
|
|||||||| | ||||||||||| || |||| |||||||||| | ||||||||| ||||||| ||||| ||| || |||||||| |||||| |
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|
| T |
32547982 |
acagtatgttcggttggttttgcattcctacacatccaactattaaagctaagcaatatcttaaatagatgtgcatagataagaaagtagt |
32548072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 875 - 977
Target Start/End: Original strand, 32520848 - 32520950
Alignment:
| Q |
875 |
aactttgaaagctaagaaatatctcaaatatatgcacacagataagatagtagtgatgtatgttagttccatccttacacaatattcaagcaacaatttt |
974 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||||||| |||||||| |||||| | |||||||||||||||||| | | |||| ||||||||||||||| |
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|
| T |
32520848 |
aactttgaaagctaagcaatatcccaaacatatgcacatagataagaaagtagtaaagtatgttagttccatcctcaaataatactcaagcaacaatttt |
32520947 |
T |
|
| Q |
975 |
cat |
977 |
Q |
| |
|
||| |
|
|
| T |
32520948 |
cat |
32520950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 457 - 567
Target Start/End: Original strand, 32547052 - 32547162
Alignment:
| Q |
457 |
ccaggaacaattcctctgtaaaatgcactgaatccttcttccctctttatggttctaaatgcatctgatattcgattatacagataaaataacatcatgg |
556 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||| || |||||| |
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|
| T |
32547052 |
ccaggaacaatccctctgtaaagtgcactaaatccttcttccctcattatggtcctaaatgcatctgatattttattttacagataaaaaaatgtcatgg |
32547151 |
T |
|
| Q |
557 |
caggttcgcaa |
567 |
Q |
| |
|
| |||| |||| |
|
|
| T |
32547152 |
ctggttagcaa |
32547162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 640 - 745
Target Start/End: Original strand, 32520648 - 32520753
Alignment:
| Q |
640 |
agttcaaaatatatagctaatgtaagatggagttcagaccatatagcccagaatatggccgtgcatgaagaagaggcgtctgaagctgcaaccttgtctt |
739 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||| ||||||||||| |||||| ||||||||||| ||| |||| || |||||||||||||| |||||||| |
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|
| T |
32520648 |
agttcagaatatatagttaatttaagatggagagcagaccatatatcccagagtatggccgtgcctgatgaagcggtgtctgaagctgcaatcttgtctt |
32520747 |
T |
|
| Q |
740 |
cactac |
745 |
Q |
| |
|
|||||| |
|
|
| T |
32520748 |
cactac |
32520753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 640 - 843
Target Start/End: Original strand, 23482549 - 23482751
Alignment:
| Q |
640 |
agttcaaaatatatagctaatgtaagatggagttcagaccatatagcccagaatatggccgtgcatgaagaagaggcgtctgaagctgcaaccttgtctt |
739 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||| ||||||||| ||||||| || | |||||||||||||||||| |
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|
| T |
23482549 |
agttcaaaatatatagccaatgtaagatggagatcagaccatatagcctagagtatggtcgtgcatgatgaagagg-gtttcaagctgcaaccttgtctt |
23482647 |
T |
|
| Q |
740 |
cactacaaaagcaggatttgcgcacaagcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaattcagttctgccacattcatgaatgtgccac |
839 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||| ||||||| || ||||||||||||| |||||| |
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|
| T |
23482648 |
cactacaaaaaaaggatttgtgcacaagcaaacctaacaacagctgaaggaaaccaaaatgactgtaacttcagttttgacacattcatgaatttgccac |
23482747 |
T |
|
| Q |
840 |
agta |
843 |
Q |
| |
|
|||| |
|
|
| T |
23482748 |
agta |
23482751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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