View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10901_low_13 (Length: 333)

Name: NF10901_low_13
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10901_low_13
NF10901_low_13
[»] chr1 (1 HSPs)
chr1 (13-333)||(48016992-48017315)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 48016992 - 48017315
Alignment:
Q  13 acctgtgaagagagaaaagccgacaatgaacattgatctgtagctgtttagattgcagaactgaagaaaaccaagtccagctgaagctgctcatcacaga 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48016992 acctatgaagagagaaaagccgacaatgaacattgatctgtagctgtttagattgcaaaactgaagaaaaccaagtccagctgaagctgctcatcacaga 48017091  T
Q  113 agaaacatgacattcaaatcagaaagaatttgacattttaaaggaacaaaa---tgcaatgcatgaaaatagtattgtaaatacattttacatgtcaagt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  48017092 agaaacatgacattcaaatcagaaagaatttgacattttaaaggaacaaaacaatgcaatgcatgaaaatagtattgtaaatacattttacatgtcaagt 48017191  T
Q  210 ttcattgaaatcacttatttgttttttggtttctggttcatgaaattctcagttcttgcagaccaacataaggatgatataattattatctctaagtgat 309  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48017192 ttcattgaaatcactaatttgttttttggtttctggttcatcaaattctcagttcttgcagaccaacataaggatgatataattattatctctaagtgat 48017291  T
Q  310 atgaaattataattgataacgaat 333  Q
    ||||||||||||||||||||||||    
T  48017292 atgaaattataattgataacgaat 48017315  T

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