View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10901_low_2 (Length: 798)

Name: NF10901_low_2
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10901_low_2
NF10901_low_2
[»] chr8 (23 HSPs)
chr8 (20-254)||(45451029-45451263)
chr8 (441-782)||(9107613-9107948)
chr8 (284-441)||(35812981-35813138)
chr8 (284-445)||(30436009-30436171)
chr8 (289-440)||(2350410-2350561)
chr8 (284-445)||(3653969-3654130)
chr8 (298-406)||(45450872-45450980)
chr8 (288-440)||(23221730-23221882)
chr8 (283-421)||(15244599-15244737)
chr8 (284-440)||(42738508-42738657)
chr8 (284-388)||(28968944-28969048)
chr8 (284-406)||(3940954-3941076)
chr8 (283-441)||(6143509-6143667)
chr8 (282-382)||(14772683-14772777)
chr8 (397-440)||(32018940-32018983)
chr8 (397-440)||(38895290-38895333)
chr8 (305-383)||(9201726-9201804)
chr8 (395-440)||(5913935-5913980)
chr8 (416-459)||(958107-958150)
chr8 (356-386)||(5913354-5913384)
chr8 (685-723)||(34048998-34049036)
chr8 (685-722)||(15078535-15078572)
chr8 (685-722)||(15167704-15167741)
[»] chr5 (32 HSPs)
chr5 (52-254)||(6453685-6453887)
chr5 (284-440)||(6238585-6238741)
chr5 (284-440)||(6900295-6900451)
chr5 (284-440)||(38355684-38355840)
chr5 (290-441)||(36016548-36016699)
chr5 (284-440)||(4695472-4695628)
chr5 (284-440)||(33907498-33907654)
chr5 (284-440)||(37205226-37205382)
chr5 (284-440)||(9996533-9996684)
chr5 (318-440)||(24477702-24477824)
chr5 (284-406)||(31230814-31230936)
chr5 (284-406)||(21732007-21732129)
chr5 (284-406)||(42860003-42860125)
chr5 (292-382)||(75628-75718)
chr5 (284-402)||(6955485-6955602)
chr5 (298-385)||(1845709-1845796)
chr5 (284-385)||(3435941-3436042)
chr5 (284-404)||(10641756-10641870)
chr5 (284-374)||(35038471-35038561)
chr5 (305-389)||(4970241-4970325)
chr5 (685-723)||(2024928-2024966)
chr5 (398-440)||(20337728-20337770)
chr5 (397-442)||(21151191-21151236)
chr5 (397-442)||(21158332-21158377)
chr5 (397-440)||(17017072-17017115)
chr5 (685-723)||(15639232-15639270)
chr5 (685-723)||(34425681-34425719)
chr5 (313-442)||(36867270-36867400)
chr5 (283-440)||(38975565-38975723)
chr5 (685-734)||(2411867-2411916)
chr5 (620-673)||(7078871-7078924)
chr5 (399-440)||(19646397-19646438)
[»] chr4 (35 HSPs)
chr4 (284-440)||(43285413-43285569)
chr4 (284-441)||(52463234-52463391)
chr4 (284-440)||(951653-951809)
chr4 (292-440)||(20033949-20034097)
chr4 (284-440)||(47295865-47296016)
chr4 (281-437)||(7137610-7137766)
chr4 (305-440)||(32594799-32594929)
chr4 (293-440)||(32768383-32768530)
chr4 (284-440)||(27870297-27870448)
chr4 (284-402)||(17544151-17544269)
chr4 (283-440)||(44341768-44341925)
chr4 (284-440)||(45522788-45522939)
chr4 (284-383)||(34858316-34858415)
chr4 (284-406)||(2323490-2323612)
chr4 (305-385)||(3409835-3409915)
chr4 (285-440)||(34031045-34031199)
chr4 (727-782)||(39655354-39655409)
chr4 (305-406)||(1324060-1324161)
chr4 (696-782)||(24613827-24613916)
chr4 (305-389)||(41361976-41362060)
chr4 (305-386)||(44857024-44857105)
chr4 (305-406)||(9454485-9454586)
chr4 (685-734)||(27111815-27111863)
chr4 (397-440)||(41882605-41882648)
chr4 (319-406)||(54134191-54134278)
chr4 (314-364)||(1704514-1704564)
chr4 (400-440)||(19823063-19823103)
chr4 (400-440)||(31615960-31616000)
chr4 (397-440)||(16624099-16624142)
chr4 (692-723)||(36363157-36363188)
chr4 (405-440)||(52278249-52278284)
chr4 (693-723)||(15734883-15734913)
chr4 (412-442)||(26706352-26706382)
chr4 (283-324)||(19241355-19241396)
chr4 (628-673)||(24404214-24404259)
[»] chr3 (24 HSPs)
chr3 (284-448)||(6884238-6884402)
chr3 (284-440)||(27877816-27877972)
chr3 (284-440)||(43745832-43745988)
chr3 (284-439)||(33986116-33986271)
chr3 (284-440)||(46312150-46312299)
chr3 (284-440)||(43736569-43736715)
chr3 (286-386)||(50737162-50737262)
chr3 (286-386)||(50775593-50775693)
chr3 (284-385)||(46219389-46219490)
chr3 (285-440)||(19976416-19976572)
chr3 (284-381)||(26843539-26843636)
chr3 (291-374)||(21075611-21075694)
chr3 (308-440)||(11486222-11486354)
chr3 (284-350)||(24311722-24311788)
chr3 (284-382)||(15326274-15326366)
chr3 (398-444)||(1459728-1459774)
chr3 (283-388)||(20511245-20511348)
chr3 (397-441)||(51884762-51884806)
chr3 (284-331)||(21390510-21390557)
chr3 (397-440)||(29522253-29522296)
chr3 (397-440)||(36638698-36638741)
chr3 (397-440)||(48912743-48912786)
chr3 (397-440)||(49507962-49508005)
chr3 (685-719)||(49392951-49392985)
[»] chr7 (21 HSPs)
chr7 (284-440)||(10993591-10993747)
chr7 (283-440)||(35710574-35710731)
chr7 (284-402)||(1873931-1874049)
chr7 (298-440)||(7505873-7506015)
chr7 (284-385)||(23025448-23025549)
chr7 (284-381)||(49113342-49113439)
chr7 (348-440)||(16526532-16526624)
chr7 (293-440)||(17471288-17471430)
chr7 (293-440)||(17581784-17581926)
chr7 (283-386)||(31271521-31271624)
chr7 (284-367)||(41202597-41202680)
chr7 (284-440)||(39489006-39489149)
chr7 (305-385)||(4267652-4267732)
chr7 (283-350)||(19106601-19106668)
chr7 (397-440)||(40921241-40921284)
chr7 (685-723)||(26917973-26918011)
chr7 (628-670)||(47115688-47115730)
chr7 (685-734)||(7398230-7398278)
chr7 (296-440)||(33605168-33605313)
chr7 (685-717)||(9021960-9021992)
chr7 (685-729)||(36903582-36903626)
[»] chr2 (27 HSPs)
chr2 (284-440)||(21104290-21104446)
chr2 (283-406)||(26555832-26555955)
chr2 (284-440)||(15613306-15613461)
chr2 (283-406)||(4469899-4470022)
chr2 (284-434)||(17921483-17921632)
chr2 (305-442)||(15560243-15560380)
chr2 (284-405)||(42730052-42730173)
chr2 (284-440)||(38837283-38837439)
chr2 (291-406)||(40860731-40860846)
chr2 (284-406)||(29205686-29205808)
chr2 (289-385)||(40000507-40000603)
chr2 (284-402)||(25096569-25096687)
chr2 (284-385)||(9471630-9471731)
chr2 (297-440)||(20921886-20922030)
chr2 (284-406)||(5271918-5272040)
chr2 (283-381)||(38571366-38571464)
chr2 (397-445)||(30556239-30556287)
chr2 (397-440)||(10710422-10710465)
chr2 (405-440)||(19944238-19944273)
chr2 (405-440)||(25868379-25868414)
chr2 (685-723)||(11952897-11952935)
chr2 (631-722)||(29694103-29694194)
chr2 (628-673)||(21190931-21190976)
chr2 (628-673)||(30175535-30175580)
chr2 (694-723)||(37622614-37622643)
chr2 (685-722)||(38400574-38400611)
chr2 (628-673)||(45156352-45156397)
[»] scaffold0564 (1 HSPs)
scaffold0564 (284-440)||(9780-9936)
[»] chr6 (18 HSPs)
chr6 (284-440)||(11369202-11369359)
chr6 (284-440)||(26519856-26520012)
chr6 (284-440)||(15071092-15071248)
chr6 (283-440)||(31654852-31655009)
chr6 (283-386)||(17878232-17878335)
chr6 (284-387)||(20143580-20143683)
chr6 (284-387)||(22189156-22189259)
chr6 (305-443)||(12075818-12075956)
chr6 (284-386)||(17868449-17868551)
chr6 (284-375)||(31470975-31471066)
chr6 (298-440)||(12271376-12271518)
chr6 (305-440)||(3044997-3045132)
chr6 (287-439)||(27965775-27965927)
chr6 (305-385)||(10998046-10998126)
chr6 (685-734)||(2477859-2477908)
chr6 (704-782)||(27994347-27994426)
chr6 (685-721)||(4036860-4036896)
chr6 (397-440)||(32464863-32464906)
[»] chr1 (25 HSPs)
chr1 (290-440)||(33189317-33189467)
chr1 (284-440)||(4221851-4222007)
chr1 (284-440)||(9660488-9660639)
chr1 (278-386)||(43263174-43263282)
chr1 (284-406)||(46158358-46158480)
chr1 (284-385)||(45756955-45757055)
chr1 (285-440)||(45566539-45566693)
chr1 (284-406)||(12749875-12749997)
chr1 (283-414)||(31488814-31488946)
chr1 (284-402)||(17332081-17332198)
chr1 (284-406)||(43780864-43780986)
chr1 (284-368)||(47188277-47188361)
chr1 (305-440)||(32058147-32058282)
chr1 (284-385)||(48469626-48469727)
chr1 (275-367)||(45040086-45040178)
chr1 (290-381)||(24682295-24682386)
chr1 (284-385)||(49228501-49228603)
chr1 (290-368)||(6502009-6502087)
chr1 (685-723)||(39135014-39135052)
chr1 (685-721)||(10926240-10926276)
chr1 (400-440)||(23973640-23973680)
chr1 (685-721)||(50146112-50146148)
chr1 (397-440)||(700561-700604)
chr1 (412-441)||(28472822-28472851)
chr1 (405-442)||(50511429-50511466)
[»] scaffold0219 (1 HSPs)
scaffold0219 (282-385)||(16435-16532)
[»] scaffold0041 (1 HSPs)
scaffold0041 (397-440)||(51811-51854)
[»] scaffold0227 (1 HSPs)
scaffold0227 (728-782)||(15748-15801)
[»] scaffold1320 (1 HSPs)
scaffold1320 (685-722)||(1131-1168)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 45451263 - 45451029
Alignment:
Q  20 atcatacccaatttgccaatctacaatgttacttgttattctgcttgttgatttgtgttttttgttgtactgttcttgttcctccttcttaggtagtgat 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45451263 atcagacccaatttgccaatctacaatgttacttgttattctgcttgttgatttgtgttttctgttgtactgttcttgttcctccttcttaggtagtgat 45451164  T
Q  120 tcattgtttgcactttagtggcttttgggttgggaggcactcttttatttctttctgccaatgtttttctttgttgttgtaggcttgtagtcacttggct 219  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45451163 tcattgtttgcaatttagtggcttttgggttgggaggtactcttttatttctttctgccaatgtttttctttgttgttgtaggcttgtagttacttggct 45451064  T
Q  220 tttgcaaatcttcttaatttaacgaatatgccgtt 254  Q
    |||||||||||||||||||||| ||||||||||||    
T  45451063 tttgcaaatcttcttaatttaatgaatatgccgtt 45451029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 441 - 782
Target Start/End: Original strand, 9107613 - 9107948
Alignment:
Q  441 tatatatacaactgttattttattttattt-aggatcatttgattttggttgtaattttacgtttcatagtcttgttatcaccttttgatcctgcgaatt 539  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| | ||||    
T  9107613 tatatatacaactattattttattttattttaggatcatttgattttggttgtaattttacattttacagtcttgttatcaccttttgatcctacaaatt 9107712  T
Q  540 aacggtgtaaagttcttccttttttgttgcaatcttatattttacaatcttgctactctttcgatcttatgttcaggttcggatctttgg-ggtgcaaac 638  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||  ||||||||||| |||||||||    
T  9107713 cacggtgtaaaattcttccttttttgttgcaatcttatattttacaatcctgctactctttcgatcttatactcagggccggatctttggaggtgcaaac 9107812  T
Q  639 agctcaatggatttgggcctccttaaggtatgggctt--nnnnnnntatatagcccagtagtactactaagtactaccccactaaaacaaatccttatga 736  Q
    ||||||||||| ||||||||||  ||||||||||| |         |||||||||||||          |||||||||||||||||||||||||||||||    
T  9107813 agctcaatggagttgggcctccccaaggtatgggcctaaaaaaatatatatagcccagt----------agtactaccccactaaaacaaatccttatga 9107902  T
Q  737 gaactctgatactacctgtgtttctttccttattctctttctctct 782  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9107903 gaactctgatactacctgtgtttctttccttattctctttctctct 9107948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 441
Target Start/End: Complemental strand, 35813138 - 35812981
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  35813138 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaactgggctttttagcccggcccttaaaagc 35813039  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctctat 441  Q
    || | | ||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  35813038 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctctat 35812981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 284 - 445
Target Start/End: Complemental strand, 30436171 - 30436009
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattc-cagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || ||  |||||||||||||||| |||||||||||| ||||||| |||||    
T  30436171 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcatttttttgcagcccatattcaaaccgggctttttagcccggcccttaaaag 30436072  T
Q  383 cccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctctatatat 445  Q
    ||| | | ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  30436071 cccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctctaaatat 30436009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 289 - 440
Target Start/End: Original strand, 2350410 - 2350561
Alignment:
Q  289 ggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgtt 388  Q
    ||||||||||||||| |||| ||||||||||||||||| |||| |||||||| ||||||||| |||  |||||||| ||| ||| || ||||||||||||    
T  2350410 ggcccgttagcccgggagcctgtatagggccgggctcgggctcaattattcccgcccatatttaaatcgggcttttcagcccggtccgaaaaagcccgtt 2350509  T
Q  389 gtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
      ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  2350510 acccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 2350561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 284 - 445
Target Start/End: Complemental strand, 3654130 - 3653969
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||| ||||||||||||| ||| ||||  || || |||||||||||||||| |||||||||||| ||||||| |||| |    
T  3654130 gggccggcccgttagcccgggagcctgtatagggccgggatcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaatc 3654031  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctctatatat 445  Q
    || | | ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3654030 ccttggcccggccgggccaggcctaaacgggccgggccgcccgttttgacagctctatatat 3653969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 298 - 406
Target Start/End: Complemental strand, 45450980 - 45450872
Alignment:
Q  298 gcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccg 397  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||| |||||||    
T  45450980 gcccggaagcccgtatagggccaggctcgggctccattattccagcccatattcaaacagggctttttagcccggccctaaaaagttcgttgcccgaccg 45450881  T
Q  398 ggccgggcc 406  Q
    |||| ||||    
T  45450880 ggcctggcc 45450872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 288 - 440
Target Start/End: Complemental strand, 23221882 - 23221730
Alignment:
Q  288 tggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgt 387  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||  || || ||||||||||| |||| |||||||||||| ||||||| |||||||| |    
T  23221882 tggcccgttagcccgggagcccgtatagggcggggctcgggctcattttttgcagcccatattgaaaccgggctttttagcccggcccttaaaagccctt 23221783  T
Q  388 tgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
     | ||  |||||||||||||||||||| ||||| |||||| ||||||||||||    
T  23221782 ggccccgccgggccgggcctaaacgggccgggctgcccgtattgacagctcta 23221730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 283 - 421
Target Start/End: Original strand, 15244599 - 15244737
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||| ||| ||  |||||||||| |||| |||||||||||| ||||||||||||     
T  15244599 cgggctggcccgttagcccggaagcccgtatagggccggactcgggctctatttttttagcccatatttaaaccgggctttttagcccggccctaaaaaa 15244698  T
Q  383 cccgttgtccgaccgggccgggcctaaacgggtcgggcc 421  Q
    ||| || ||||  ||||||||| ||||||||| ||||||    
T  15244699 cccattatccgttcgggccgggactaaacgggccgggcc 15244737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 42738657 - 42738508
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||       ||| ||| || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  42738657 gggctggcccgttagcccgggagcccgtatagggccgg-------ctctatttttacagcccatattcaaaccgggctttttagcccggcccttaaaagc 42738565  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||||||||  |||||||||||||| | |||||||||||||||||||||||    
T  42738564 ccttggcccgaccggatcgggcctaaacgggccaggccgcccgttttgacagctcta 42738508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 284 - 388
Target Start/End: Original strand, 28968944 - 28969048
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||| ||||||| ||| ||||||| ||||||    
T  28968944 gggctggctcgttagcccggaagcccgtacagggccgggctcgggctctatttttccagcccatattcaaacaaggcttttcagcccggcccttaaaagc 28969043  T
Q  384 ccgtt 388  Q
     ||||    
T  28969044 tcgtt 28969048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 3940954 - 3941076
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  3940954 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaactgggctttttagcccggcccttaaaagc 3941053  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    || | | ||| || |||||||||    
T  3941054 ccttggcccggccaggccgggcc 3941076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 283 - 441
Target Start/End: Original strand, 6143509 - 6143667
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    ||||||||||||||||||||| |||| ||||||||||||||||| |||| |||||| || ||| |||| |||  |||||||| ||| || ||||||||||    
T  6143509 cgggctggcccgttagcccgggagcctgtatagggccgggctcgggctctattatttcatcccgtatttaaatcgggcttttcagcccgaccctaaaaag 6143608  T
Q  383 cccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctctat 441  Q
    ||||  | |||  |||||||| || ||| ||| |  |  ||||||||||||||||||||    
T  6143609 cccgcagcccgttcgggccggcccgaaaagggccccgtagcccgttttgacagctctat 6143667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 382
Target Start/End: Complemental strand, 14772777 - 14772683
Alignment:
Q  282 ccgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaa 381  Q
    |||||||||||||||||||||| ||||| |||||||      ||| |||| ||||||| |||||||||| ||||  |||||||||||||||||||| |||    
T  14772777 ccgggctggcccgttagcccgggagcccatataggg------tcgggctcaattattctagcccatatttaaaccaggctttttagctcggccctacaaa 14772684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 32018940 - 32018983
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  32018940 gggccggccctaaacgggccgggccgcccgttttgacagctcta 32018983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 38895290 - 38895333
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  38895290 gggccggccctaaacgggccgggccgcccgttttgacagctcta 38895333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 9201726 - 9201804
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||| ||||| |||| |||||| |||||| |||| |||| || ||||| ||  ||||||||||||||    
T  9201726 agcccgtatagggccgagctcgggctctattatttcagcccgtatttaaaccggacttttcagtccggccctaaaaagc 9201804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 5913935 - 5913980
Alignment:
Q  395 ccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||    
T  5913935 ccgggccgaccctaaacgggccgggccgcccgttttgacagctcta 5913980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 459
Target Start/End: Original strand, 958107 - 958150
Alignment:
Q  416 cgggccgcccgttttgacagctctatatatatacaactgttatt 459  Q
    |||||||||||||||||||||| |||||||||| || |||||||    
T  958107 cgggccgcccgttttgacagctatatatatatataagtgttatt 958150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 386
Target Start/End: Original strand, 5913354 - 5913384
Alignment:
Q  356 agggctttttagctcggccctaaaaagcccg 386  Q
    |||||||||||||||||||||||||||||||    
T  5913354 agggctttttagctcggccctaaaaagcccg 5913384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 723
Target Start/End: Complemental strand, 34049036 - 34048998
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaa 723  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  34049036 tatagcccagtagaactactaagtactaccctactaaaa 34048998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 722
Target Start/End: Original strand, 15078535 - 15078572
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaa 722  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  15078535 tatagctcagtggtactactaagtactaccccactaaa 15078572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 722
Target Start/End: Complemental strand, 15167741 - 15167704
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaa 722  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  15167741 tatagctcagtagtactactaagtacttccccactaaa 15167704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 52 - 254
Target Start/End: Original strand, 6453685 - 6453887
Alignment:
Q  52 ttgttattctgcttgttgatttgtgttttttgttgtactgttcttgttcctccttcttaggtagtgattcattgtttgcactttagtggcttttgggttg 151  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6453685 ttgttattctgcttgttgatttgtgctttttgttgtactgttcttgttcctccttcttaggtagtgattcattgtttgcactttagtggcttttgggttg 6453784  T
Q  152 ggaggcactcttttatttctttctgccaatgtttttctttgttgttgtaggcttgtagtcacttggcttttgcaaatcttcttaatttaacgaatatgcc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  6453785 ggaggcactcttttatttctttctgccaatgtttttctttgttgttgtaggcttgtagttacttggcttttgcaaatcttcctaatttaatgaatatgcc 6453884  T
Q  252 gtt 254  Q
    |||    
T  6453885 gtt 6453887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 6238585 - 6238741
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  6238585 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 6238684  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  6238685 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 6238741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 6900295 - 6900451
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  6900295 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 6900394  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||| ||||||||||| |||||||||||||||||||||||||    
T  6900395 ccttggcccggccgggccgagcctaaacgggccgggccgcccgttttgacagctcta 6900451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 38355840 - 38355684
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| || |||| ||||||    
T  38355840 gggctggcccgttagccagggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccgacccttaaaagc 38355741  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38355740 ccttggcccggccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 38355684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 290 - 441
Target Start/End: Original strand, 36016548 - 36016699
Alignment:
Q  290 gcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttg 389  Q
    |||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| |||||||| | |    
T  36016548 gcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttgg 36016647  T
Q  390 tccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctctat 441  Q
     ||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  36016648 cccggccgggccgggcctaaacgggccgggccgcccgttttgacagctctat 36016699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 4695628 - 4695472
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||    || |  |||||||||||||||| |||||||||||| ||||||| ||||||    
T  4695628 gggctggcccgttagcccgggagcccgtatagggccgggctcgggcctgtttttagcagcccatattcaaaccgggctttttagcccggcccttaaaagc 4695529  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  4695528 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 4695472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 33907654 - 33907498
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||| ||| |||||||| |||| |||||||| |||| ||| |||||||||||||| |||  |||||||||||| ||||||| ||||||    
T  33907654 gggctggcccgttagctcgggagcccgtaaagggtcgggctcgggctctatttttccagcccatatttaaatcgggctttttagcccggcccttaaaagc 33907555  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || |   ||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  33907554 ccttgacccggccggaccgggcctaaacgggtcgggccgcccgttttgacagctcta 33907498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 37205382 - 37205226
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| |||||| |||||| |||| |||| |||||||||||| ||||||||||||||    
T  37205382 gggctggcccgttagcccgggagcccgtatagggccaggctcgggctctattatttcagcccgtatttaaaccgggctttttagcccggccctaaaaagc 37205283  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||  | ||| ||||||| | || ||||||||||||  ||||| |||||||||||||    
T  37205282 ccgaagcccgtccgggccagcccgaaacgggtcgggtagcccgctttgacagctcta 37205226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 9996533 - 9996684
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| | ||||| ||||||    
T  9996533 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccagcccttaaaagc 9996632  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || |     | || ||||||||||||||||| |||||||||||||||||||||||||    
T  9996633 cctt-----ggcccggccgggcctaaacgggccgggccgcccgttttgacagctcta 9996684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 318 - 440
Target Start/End: Original strand, 24477702 - 24477824
Alignment:
Q  318 ccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccgggcctaaacgggtcg 417  Q
    ||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| |||||||| | | ||| |||||||||||||||||||| ||    
T  24477702 ccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgggccgggcctaaacgggccg 24477801  T
Q  418 ggccgcccgttttgacagctcta 440  Q
    |||||||||||||||||||||||    
T  24477802 ggccgcccgttttgacagctcta 24477824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 31230814 - 31230936
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| || | ||| |||||||||||||| |||| ||| |||||||| |||| ||||||||     
T  31230814 gggctggcccgttagcccgggagcccgtatagggccgggctcgggccctatttttccagcccatatttaaaccgggttttttagcccggctctaaaaagt 31230913  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    | |||| |||| |||||||||||    
T  31230914 ctgttgcccgatcgggccgggcc 31230936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 21732007 - 21732129
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  21732007 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 21732106  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    || | | ||| || |||||||||    
T  21732107 ccttggcccggcccggccgggcc 21732129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 42860125 - 42860003
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| ||||||||||||||||| |||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  42860125 gggccggcccgttagcccgggagcccgtatagggccggactcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 42860026  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    || | | ||| || |||||||||    
T  42860025 ccttggcccggcccggccgggcc 42860003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 75628 - 75718
Alignment:
Q  292 ccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    ||||||||| || |||||||||||||||||||||| |||| ||||||||||||| |||| ||| ||||||||||| | |||||||||||||    
T  75628 ccgttagcctgggagcccgtatagggccgggctcgggctcaattattccagcccttatttaaatagggctttttaacccggccctaaaaag 75718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 284 - 402
Target Start/End: Complemental strand, 6955602 - 6955485
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| ||||| |||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  6955602 gggccggcccgttagcccgggagccc-tatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 6955504  T
Q  384 ccgttgtccgaccgggccg 402  Q
    || | | ||| ||||||||    
T  6955503 ccttggcccggccgggccg 6955485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 298 - 385
Target Start/End: Original strand, 1845709 - 1845796
Alignment:
Q  298 gcccggaagcccgtatagggccgggctcgagctccattattc-cagcccatattcaaacagggctttttagctcggccctaaaaagccc 385  Q
    |||||| |||||||||||||||||||||| |||| ||||||  |||||||||||||||| |||||||||||| ||||||| ||||||||    
T  1845709 gcccgggagcccgtatagggccgggctcgggctc-attatttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 1845796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 3436042 - 3435941
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    ||||||||||||||||| || |||||||| ||||||| ||| | |||| ||| |||||| |||||||||||| |||||||||||  || |||| ||||||    
T  3436042 gggctggcccgttagccagggagcccgtaaagggccgcgcttgggctctatttttccagtccatattcaaactgggctttttagtccgacccttaaaagc 3435943  T
Q  384 cc 385  Q
    ||    
T  3435942 cc 3435941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 284 - 404
Target Start/End: Complemental strand, 10641870 - 10641756
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||        || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  10641870 gggccggcccgttagcccgggagcccgtatagggccgggctcat------tttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 10641777  T
Q  384 ccgttgtccgaccgggccggg 404  Q
    || | | ||| ||||||||||    
T  10641776 ccttggcccggccgggccggg 10641756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 35038561 - 35038471
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggcc 374  Q
    |||| ||||||||||||||| ||||||||||||| |||||||| ||||  || || |||||||||||||||| |  ||||||||| |||||    
T  35038561 gggccggcccgttagcccgggagcccgtatagggtcgggctcgggctcattttttgcagcccatattcaaaccgaactttttagcccggcc 35038471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 4970325 - 4970241
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttg 389  Q
    ||||||||| |||||||||||| |||| | | ||||||| |||||| |||| |||||||||| | ||||||| ||||||||||||    
T  4970325 agcccgtattgggccgggctcgggctctaattttccagctcatatttaaactgggctttttaacccggccctcaaaagcccgttg 4970241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 685 - 723
Target Start/End: Complemental strand, 2024966 - 2024928
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaa 723  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2024966 tatagcccagtagtactactaagtactaccccactaaaa 2024928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 398 - 440
Target Start/End: Complemental strand, 20337770 - 20337728
Alignment:
Q  398 ggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  20337770 ggccgggcctaaacgggtcgggccgcccattttgacagctcta 20337728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 21151236 - 21151191
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctctata 442  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||    
T  21151236 gggccggccctaaacgggccgggccgcccgttttgacagctctata 21151191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 21158377 - 21158332
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctctata 442  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  21158377 gggccggccctaaacgggtcgggctgcccgttttgacagctctata 21158332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 17017072 - 17017115
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||||||||||||||||| |||||||||||||||||    
T  17017072 gggccggacctaaacgggtcgggccgtccgttttgacagctcta 17017115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 723
Target Start/End: Original strand, 15639232 - 15639270
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaa 723  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  15639232 tatagtccagtagtactactaagtactaccccactaaaa 15639270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 723
Target Start/End: Original strand, 34425681 - 34425719
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaa 723  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  34425681 tatagcccagtagtattactaagtactaccccactaaaa 34425719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 36867270 - 36867400
Alignment:
Q  313 tagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccgggcc-taaac 411  Q
    |||||||||||||| |||| ||||||||| ||| |||| |||  |||||||| ||  || ||||||||||||||||| ||   |||||||| ||  ||||    
T  36867270 tagggccgggctcgggctcaattattccaacccgtatttaaatcgggcttttcagtccgaccctaaaaagcccgttgcccattcgggccggcccaaaaac 36867369  T
Q  412 gggtcgggccgcccgttttgacagctctata 442  Q
    |||  |||  ||| |||||||||||||||||    
T  36867370 gggctgggtagcctgttttgacagctctata 36867400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 283 - 440
Target Start/End: Complemental strand, 38975723 - 38975565
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatatt-caaacagggctttttagctcggccctaaaaa 381  Q
    |||||| || ||||||||| | |||||||||||||||||||||| |||| ||| ||| || ||||||| ||  | ||||||||| || |||||| | |||    
T  38975723 cgggctagctcgttagcccaggagcccgtatagggccgggctcgggctctatttttcgagtccatattacaccccgggctttttggcccggcccgataaa 38975624  T
Q  382 gcccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||||  | |||||  |||||| ||     ||| ||| |||||||||||||||||||||    
T  38975623 gcccgaagcccgactaggccggcccgtttagggccggaccgcccgttttgacagctcta 38975565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 734
Target Start/End: Original strand, 2411867 - 2411916
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaacaaatccttat 734  Q
    ||||| ||| |||| |||||||||||||||||||||||| ||||| ||||    
T  2411867 tatagtccaatagtgctactaagtactaccccactaaaaaaaatcattat 2411916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 673
Target Start/End: Original strand, 7078871 - 7078924
Alignment:
Q  620 ggatctttggggtgcaaacagctcaatggatttgggcctccttaaggtatgggc 673  Q
    ||||||||||||||||||| |||||||||| ||||  | ||| |||||||||||    
T  7078871 ggatctttggggtgcaaactgctcaatggagttggatcacctcaaggtatgggc 7078924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 19646438 - 19646397
Alignment:
Q  399 gccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||    
T  19646438 gccggccctaaacggatcgggccacccgttttgacagctcta 19646397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 5e-52; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 43285569 - 43285413
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||| ||| || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  43285569 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctctatttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 43285470  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  43285469 ccttggcccgtccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 43285413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 441
Target Start/End: Complemental strand, 52463391 - 52463234
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||| ||| || |||||||||||||||  |||||||||||| ||||||| ||||||    
T  52463391 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctctatttttgcagcccatattcaaatcgggctttttagcccggcccttaaaagc 52463292  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctctat 441  Q
    || | | |||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  52463291 ccttggcccgatcgggccgggcctaaacgggccgggccgcccgttttgacagctctat 52463234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 951653 - 951809
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  951653 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 951752  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  951753 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 951809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 20034097 - 20033949
Alignment:
Q  292 ccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtc 391  Q
    |||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| |||||||| |   |    
T  20034097 ccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttgacc 20033998  T
Q  392 cgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || || ||||||| ||||||||| |||||||||||||||||||||||||    
T  20033997 cggcccggccggggctaaacgggccgggccgcccgttttgacagctcta 20033949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 47295865 - 47296016
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| |||||||||||||||  ||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  47295865 gggccggcccgttagcccgggggcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 47295964  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || |     | || |||||||||||||||||||||||||||||||||||||||||||    
T  47295965 cctt-----ggcccggccgggcctaaacgggtcgggccgcccgttttgacagctcta 47296016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 281 - 437
Target Start/End: Complemental strand, 7137766 - 7137610
Alignment:
Q  281 tccgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaa 380  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||   ||| |||||| |||| |||||||||||||| ||||||||| |  || |||||    
T  7137766 tccgggctggtccgttaacccgggagcccgtatagggccgggctcagactcgattatttcagcacatattcaaacaggactttttagcccaaccttaaaa 7137667  T
Q  381 agcccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagct 437  Q
    ||||| |||||||||||| |||| |||||||||| | ||||||||||||||| ||||    
T  7137666 agcccattgtccgaccggaccggacctaaacgggccaggccgcccgttttgatagct 7137610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 305 - 440
Target Start/End: Original strand, 32594799 - 32594929
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccggg 404  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||| |||||| ||||||||||||     ||| ||||| |    
T  32594799 agcccgtatagggccgggctcgagctcaattattccagcccatatttaaaccgggcttttcagcccggcccgaaaaagcccgtt-----acccggccgag 32594893  T
Q  405 cctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||||||||| ||||||| |||||||||||||||||    
T  32594894 cctaaacgggccgggccgtccgttttgacagctcta 32594929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 293 - 440
Target Start/End: Original strand, 32768383 - 32768530
Alignment:
Q  293 cgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtcc 392  Q
    ||||||||||| |||||||||||||||| ||||| |||| ||| |||  ||||||||| |||  |||||||||||| ||||||| ||||| |||||| ||    
T  32768383 cgttagcccgggagcccgtatagggccgtgctcgggctctatttttcaggcccatatttaaatcgggctttttagcccggccctcaaaagtccgttgccc 32768482  T
Q  393 gaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |  ||||||||||||||||||| ||| |||||||||||||||||||||    
T  32768483 gttcgggccgggcctaaacgggccggaccgcccgttttgacagctcta 32768530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 27870297 - 27870448
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||| ||||||| |||||||||||||||||||||| ||||  || || | |||||||||||||| |||||||||||| ||||||| ||||||    
T  27870297 gggccggcccgtcagcccgggagcccgtatagggccgggctcgggctcattttttgcggcccatattcaaaccgggctttttagcccggcccttaaaagc 27870396  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || |     | || || ||||||||||||||||||||||||| ||||||||||||||    
T  27870397 cctt-----ggcccggtcgggcctaaacgggtcgggccgcccattttgacagctcta 27870448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 17544151 - 17544269
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  17544151 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 17544250  T
Q  384 ccgttgtccgaccgggccg 402  Q
    || | | ||| ||||||||    
T  17544251 ccttggcccggccgggccg 17544269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 283 - 440
Target Start/End: Original strand, 44341768 - 44341925
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    |||| |||||||||||||||| |||||||||||||||||||||| |||| |||||| |||||| |||| |||| |||||||| ||| ||| |||||||||    
T  44341768 cgggttggcccgttagcccgggagcccgtatagggccgggctcgggctctattatttcagcccgtatttaaaccgggcttttcagcccggtcctaaaaag 44341867  T
Q  383 cccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||  | |||   ||||||| || ||| ||||||||  ||||||||||| |||||||    
T  44341868 cccgcagcccgtttgggccggcccaaaaagggtcgggtagcccgttttgatagctcta 44341925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 45522788 - 45522939
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||| |||||| || |||||||||||||||||||||| ||||  || || ||  |||||||||||| |||||||||||| ||||||| ||||||    
T  45522788 gggccggcccattagcctgggagcccgtatagggccgggctcgggctcattttttgcaatccatattcaaaccgggctttttagcccggcccttaaaagc 45522887  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || |     | || ||||||||||||||||| |||||||||||||||||||||||||    
T  45522888 cctt-----ggcccggccgggcctaaacggggcgggccgcccgttttgacagctcta 45522939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 284 - 383
Target Start/End: Complemental strand, 34858415 - 34858316
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||| ||||||| ||| ||||||| ||||||    
T  34858415 gggctggctcgttagcccggaagcccgtacagggccgggctcgggctctatttttccagcccatattcaaacaaggcttttcagcccggcccttaaaagc 34858316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 2323612 - 2323490
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| ||| |||||||| || |||| ||||||    
T  2323612 gggctggcccattagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggttttttagcccgacccttaaaagc 2323513  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    || | ||||| | ||||||||||    
T  2323512 ccttggtccggcggggccgggcc 2323490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 3409915 - 3409835
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagccc 385  Q
    |||||||||||||||||||||| |||| ||| || ||||||||||||||||  ||||||||||| ||||||| ||||||||    
T  3409915 agcccgtatagggccgggctcgggctctatttttgcagcccatattcaaaccaggctttttagcccggcccttaaaagccc 3409835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 285 - 440
Target Start/End: Original strand, 34031045 - 34031199
Alignment:
Q  285 ggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcc 384  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||| | |||||  |||||| ||  ||||||||||||| |  |||||| | ||||||    
T  34031045 ggctggcccgttagcccgggagcctgtatagggccgggctcgggctctaatattcatgcccatttttcaacagggctttttggtccggcccgataaagcc 34031144  T
Q  385 cgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||  | |||   ||||| | |||||||||  ||||||| |||||||||||||||||    
T  34031145 cgaagcccgttagggccagccctaaacggcccgggccg-ccgttttgacagctcta 34031199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 727 - 782
Target Start/End: Complemental strand, 39655409 - 39655354
Alignment:
Q  727 atccttatgagaactctgatactacctgtgtttctttccttattctctttctctct 782  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  39655409 atccttatgagaactctgataccacccgtgtttctttccttattctctttctctct 39655354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 305 - 406
Target Start/End: Complemental strand, 1324161 - 1324060
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccggg 404  Q
    ||||||||||||||| | |||| |||||||| ||| ||  ||||||||||| |||||||| ||  |||||||||||||| ||||| ||||||||| ||||    
T  1324161 agcccgtatagggccagactcgggctccatttttcaagttcatattcaaaccgggcttttcagtccggccctaaaaagctcgttgcccgaccgggtcggg 1324062  T
Q  405 cc 406  Q
    ||    
T  1324061 cc 1324060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 696 - 782
Target Start/End: Original strand, 24613827 - 24613916
Alignment:
Q  696 agtactactaagtactaccccactaaaacaaat-----ccttatgagaactctgatactacctgtgtttctttccttattctctttctctct 782  Q
    |||||||||||||||||||||||||||| ||||     | || ||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  24613827 agtactactaagtactaccccactaaaataaataaattctttttgagaactctgatacca--tgtgtttctttccttattctctttctctct 24613916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 305 - 389
Target Start/End: Original strand, 41361976 - 41362060
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttg 389  Q
    |||| ||||||||||||||||| |||| ||||||||||||| |||| ||| |||| | |||||| ||||| ||||||||||||||    
T  41361976 agcctgtatagggccgggctcgggctcaattattccagcccttatttaaatagggatgtttagcccggccttaaaaagcccgttg 41362060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 44857105 - 44857024
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccg 386  Q
    ||||||||||||||||||||| || || ||||||||||||| |||| |||| |||||| ||||| ||| ||||||| |||||    
T  44857105 agcccgtatagggccgggctcaagatctattattccagcccgtatttaaaccgggcttattagcccggtcctaaaatgcccg 44857024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 406
Target Start/End: Complemental strand, 9454586 - 9454485
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccggg 404  Q
    ||||| |||||||| ||||||| |||| ||||||||| |||||||| |||  ||| |||||||| |||||||  |||||||| ||  ||| |||||||||    
T  9454586 agcccatatagggctgggctcgggctcaattattccaacccatatttaaatcgggttttttagcccggccctgcaaagcccgctgctcgatcgggccggg 9454487  T
Q  405 cc 406  Q
    ||    
T  9454486 cc 9454485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 685 - 734
Target Start/End: Original strand, 27111815 - 27111863
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaacaaatccttat 734  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27111815 tatagcccagtagtactactaagtactaccccattaaaa-aaatccttat 27111863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 41882648 - 41882605
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  41882648 gggccggccctaaacgggccgggccgcccgttttgacagctcta 41882605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 319 - 406
Target Start/End: Complemental strand, 54134278 - 54134191
Alignment:
Q  319 cgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccgggcc 406  Q
    |||||||| ||||  || || |||||||||||||||| |||||||||||| |||||||  ||||||| | | ||| ||||||||||||    
T  54134278 cgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttgaaagcccttggcccggccgggccgggcc 54134191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 1704564 - 1704514
Alignment:
Q  314 agggccgggctcgagctccattattccagcccatattcaaacagggctttt 364  Q
    ||||| ||||||| |||| ||| ||||||||||||||||||||||||||||    
T  1704564 agggctgggctcgggctctatttttccagcccatattcaaacagggctttt 1704514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 19823103 - 19823063
Alignment:
Q  400 ccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  19823103 ccggccctaaacgggtcggaccgcccgttttgacagctcta 19823063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 31616000 - 31615960
Alignment:
Q  400 ccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  31616000 ccggtcctaaacgggtcggtccgcccgttttgacagctcta 31615960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 16624099 - 16624142
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| || ||||||| |||||||||||||||||||||||||    
T  16624099 gggccggccccaaacgggccgggccgcccgttttgacagctcta 16624142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 723
Target Start/End: Complemental strand, 36363188 - 36363157
Alignment:
Q  692 cagtagtactactaagtactaccccactaaaa 723  Q
    ||||||||||||||||||||||||||||||||    
T  36363188 cagtagtactactaagtactaccccactaaaa 36363157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 52278284 - 52278249
Alignment:
Q  405 cctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||||| |||||||||||||||||||||||||||||    
T  52278284 cctaaatgggtcgggccgcccgttttgacagctcta 52278249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 693 - 723
Target Start/End: Original strand, 15734883 - 15734913
Alignment:
Q  693 agtagtactactaagtactaccccactaaaa 723  Q
    |||||||||||||||||||||||||||||||    
T  15734883 agtagtactactaagtactaccccactaaaa 15734913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 26706382 - 26706352
Alignment:
Q  412 gggtcgggccgcccgttttgacagctctata 442  Q
    |||||||||||||||||||||||||||||||    
T  26706382 gggtcgggccgcccgttttgacagctctata 26706352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 19241355 - 19241396
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggct 324  Q
    |||||||||||| |||||||| ||||||||||||||| ||||    
T  19241355 cgggctggcccgatagcccgggagcccgtatagggccaggct 19241396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 673
Target Start/End: Original strand, 24404214 - 24404259
Alignment:
Q  628 ggggtgcaaacagctcaatggatttgggcctccttaaggtatgggc 673  Q
    ||||||||||||||||||||||  |||||||||  |||||||||||    
T  24404214 ggggtgcaaacagctcaatggagctgggcctccccaaggtatgggc 24404259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 5e-52; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 284 - 448
Target Start/End: Complemental strand, 6884402 - 6884238
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  6884402 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 6884303  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctctatatatata 448  Q
    || | | ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  6884302 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctctaaatatata 6884238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 27877816 - 27877972
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| || |||| ||||||    
T  27877816 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccgacccttaaaagc 27877915  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27877916 ccttggcccggccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 27877972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 43745988 - 43745832
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  43745988 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 43745889  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  43745888 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 43745832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 284 - 439
Target Start/End: Original strand, 33986116 - 33986271
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    ||||||||||||||| |||| |||||||||||||||||||||| |||| ||| || ||||||||||| |||| |||||||||||| ||||||| ||||||    
T  33986116 gggctggcccgttagtccgggagcccgtatagggccgggctcgggctctatttttgcagcccatattaaaaccgggctttttagcccggcccttaaaagc 33986215  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctct 439  Q
    || | | |||||||| | |  |||||||||| ||| ||||||||||||||||||||    
T  33986216 ccttggcccgaccggactgaacctaaacgggacggaccgcccgttttgacagctct 33986271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 46312150 - 46312299
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||  ||||||| ||||||    
T  46312150 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagtccggcccttaaaagc 46312249  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||| |       ||||||||||||||||||| |||||||||||||||||||||||||    
T  46312250 ccggt-------cgggccgggcctaaacgggccgggccgcccgttttgacagctcta 46312299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 43736569 - 43736715
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||| ||||||||||||| |||| | | ||||||||||||||||||| |||||||||||| |||||||           
T  43736569 gggctggcccgttagcccgggagcccgtaaagggccgggctcgggctctacttttccagcccatattcaaactgggctttttagcccggccct------- 43736661  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
       | | ||| ||||||||||| |||||||| |||||||||||||||||||||||||    
T  43736662 ---tggcccggccgggccgggcttaaacgggccgggccgcccgttttgacagctcta 43736715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 286 - 386
Target Start/End: Complemental strand, 50737262 - 50737162
Alignment:
Q  286 gctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagccc 385  Q
    ||||| |||||||||||| |||||||| ||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  50737262 gctggtccgttagcccgggagcccgtaaagggccgggctcgggctctatttttccagcccatattcaaaccgggctttttagcccggcccttaaaagccc 50737163  T
Q  386 g 386  Q
    |    
T  50737162 g 50737162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 286 - 386
Target Start/End: Original strand, 50775593 - 50775693
Alignment:
Q  286 gctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagccc 385  Q
    ||||| |||||||||||| |||||||| ||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  50775593 gctggtccgttagcccgggagcccgtaaagggccgggctcgggctctatttttccagcccatattcaaaccgggctttttagcccggcccttaaaagccc 50775692  T
Q  386 g 386  Q
    |    
T  50775693 g 50775693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 46219389 - 46219490
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  46219389 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 46219488  T
Q  384 cc 385  Q
    ||    
T  46219489 cc 46219490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 285 - 440
Target Start/End: Original strand, 19976416 - 19976572
Alignment:
Q  285 ggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttag-ctcggccctaaaaagc 383  Q
    |||||||||| |||||||| |||||||||||||||||||||| |||| | ||||||||| |||||| |||| ||||||||||| | |||||| |||||||    
T  19976416 ggctggcccgatagcccgggagcccgtatagggccgggctcgggctctaatattccagcacatatttaaactgggctttttagccccggcccgaaaaagc 19976515  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||| |  |||  |||||||  || ||||||  ||||  |||||||||||||||||||    
T  19976516 ccgcttcccgttcgggccgacccgaaacggaccgggtagcccgttttgacagctcta 19976572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 26843636 - 26843539
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaa 381  Q
    |||||||||||||||||||| || |||||||||||||||||||  ||| ||| ||||||| |||||| |||| |||||||||||| ||||||||||||    
T  26843636 gggctggcccgttagcccgggagtccgtatagggccgggctcggcctctatttttccagcacatatttaaactgggctttttagcccggccctaaaaa 26843539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 21075694 - 21075611
Alignment:
Q  291 cccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggcc 374  Q
    ||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| |||||    
T  21075694 cccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcc 21075611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 308 - 440
Target Start/End: Original strand, 11486222 - 11486354
Alignment:
Q  308 ccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccgggcct 407  Q
    ||||||||||||||||||| |||| || |||||||||| |||| |||| |||||||||||| ||| |||||||| ||||    |||  ||||| ||  |     
T  11486222 ccgtatagggccgggctcgggctctatcattccagcccgtatttaaaccgggctttttagcccggtcctaaaaaacccgcaacccgttcgggctggctcg 11486321  T
Q  408 aaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| ||||  |||||||||||||||||||    
T  11486322 aaacgggccgggtagcccgttttgacagctcta 11486354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 24311722 - 24311788
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatatt 350  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||| |||||| |||||| ||||    
T  24311722 gggctgacccgtttgcccggaagcccgtatagggtcgggctcgagctctattatttcagcccgtatt 24311788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 382
Target Start/End: Original strand, 15326274 - 15326366
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    |||||||||||||||||||| ||||| ||||||| ||||||| |      |||||| |||||||||| ||||  |||||||||||||||||||| ||||    
T  15326274 gggctggcccgttagcccgggagcccatatagggtcgggctcaa------ttattctagcccatatttaaacctggctttttagctcggccctacaaag 15326366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 398 - 444
Target Start/End: Complemental strand, 1459774 - 1459728
Alignment:
Q  398 ggccgggcctaaacgggtcgggccgcccgttttgacagctctatata 444  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||    
T  1459774 ggccggccctaaacgggtcgggccgcccgttttaacagctctatata 1459728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 283 - 388
Target Start/End: Original strand, 20511245 - 20511348
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    ||||||||||||||||||||| ||||||||||||  | |||||  |||| ||||||||||||| |||| ||| |||| |||||| | ||  ||||||||     
T  20511245 cgggctggcccgttagcccgggagcccgtatagg--ccggctcaggctcaattattccagcccttatttaaatagggttttttaacccgatcctaaaaaa 20511342  T
Q  383 cccgtt 388  Q
    ||||||    
T  20511343 cccgtt 20511348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 51884806 - 51884762
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctctat 441  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  51884806 gggccggccctaaacggatcgggccgcccgttttgacagctctat 51884762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 21390510 - 21390557
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctc 331  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  21390510 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctc 21390557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 29522296 - 29522253
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  29522296 gggccggccctaaacgggtcgggccgcccattttgacagctcta 29522253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 36638698 - 36638741
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||    
T  36638698 gggccggccctaaacgggccggaccgcccgttttgacagctcta 36638741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 48912786 - 48912743
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||    
T  48912786 gggccggccctaaacgggccgggccgcccgttttgatagctcta 48912743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 49507962 - 49508005
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||| ||||| |||||||||||||||||||||||||    
T  49507962 gggccggccctagacgggccgggccgcccgttttgacagctcta 49508005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 719
Target Start/End: Original strand, 49392951 - 49392985
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccact 719  Q
    ||||||||||||||||||||||||||| |||||||    
T  49392951 tatagcccagtagtactactaagtactgccccact 49392985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 1e-49; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 10993591 - 10993747
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  10993591 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 10993690  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  10993691 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 10993747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 283 - 440
Target Start/End: Original strand, 35710574 - 35710731
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||| ||| ||||||||||||| |||||||||||||    
T  35710574 cgggctggcccgttagcccgggagcccgtatagggccgggctcgggctcaattattccagcccttatttaaatagggctttttagcccggccctaaaaag 35710673  T
Q  383 cccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||  |||    | |||| || ||||||| ||||  |||||||||||||||||||    
T  35710674 cccgttacccgtttagcccggcccgaaacgggccgggtagcccgttttgacagctcta 35710731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 1873931 - 1874049
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  1873931 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 1874030  T
Q  384 ccgttgtccgaccgggccg 402  Q
    || | | ||| ||||||||    
T  1874031 ccttggcccggccgggccg 1874049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 298 - 440
Target Start/End: Original strand, 7505873 - 7506015
Alignment:
Q  298 gcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccg 397  Q
    |||||| |||||||||||||||| ||||| |||| | ||||||||||| |||| ||||||||||||||||| |||| | ||||| |||| || |||  ||    
T  7505873 gcccgggagcccgtatagggccgagctcgggctctaatattccagcccgtatttaaacagggctttttagcccggctcgaaaaaacccgctgcccgttcg 7505972  T
Q  398 ggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||||| || ||||||| ||||  |||||||||||||||||||    
T  7505973 ggccggcccgaaacggggcgggtagcccgttttgacagctcta 7506015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 23025448 - 23025549
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  23025448 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 23025547  T
Q  384 cc 385  Q
    ||    
T  23025548 cc 23025549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 49113342 - 49113439
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaa 381  Q
    |||||||||||||||||||| |||||||| ||||||||||||| |||| ||| ||||||||||||||||||| ||  |||||||| ||||||| ||||    
T  49113342 gggctggcccgttagcccgggagcccgtaaagggccgggctcgggctctatttttccagcccatattcaaaccggattttttagcccggcccttaaaa 49113439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 440
Target Start/End: Original strand, 16526532 - 16526624
Alignment:
Q  348 attcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||||||| |||||||||||| ||||||| |||||||| | | ||| |||||||||||||||||||| |||||||||| ||||||||||||||    
T  16526532 attcaaaccgggctttttagcccggcccttaaaagcccttggcccggccgggccgggcctaaacgggccgggccgcccattttgacagctcta 16526624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 293 - 440
Target Start/End: Complemental strand, 17471430 - 17471288
Alignment:
Q  293 cgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtcc 392  Q
    ||||||||||| || ||||| ||||||||||||| |||| ||| ||||| || |||||||||| || ||||||||| ||||||| |||||||| |         
T  17471430 cgttagcccgggagtccgtaaagggccgggctcgggctctatttttccaacctatattcaaaccggactttttagcccggcccttaaaagccctt----- 17471336  T
Q  393 gaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    | || ||||||||||||| |||  ||||||||||||||||||||||||    
T  17471335 ggcccggccgggcctaaaagggcagggccgcccgttttgacagctcta 17471288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 293 - 440
Target Start/End: Original strand, 17581784 - 17581926
Alignment:
Q  293 cgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtcc 392  Q
    ||||||||||| || ||||| ||||||||||||| |||| ||| ||||| || |||||||||| || ||||||||| ||||||| |||||||| |         
T  17581784 cgttagcccgggagtccgtaaagggccgggctcgggctctatttttccaacctatattcaaaccggactttttagcccggcccttaaaagccctt----- 17581878  T
Q  393 gaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    | || ||||||||||||| |||  ||||||||||||||||||||||||    
T  17581879 ggcccggccgggcctaaaagggcagggccgcccgttttgacagctcta 17581926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 283 - 386
Target Start/End: Complemental strand, 31271624 - 31271521
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    |||||||||||| |||||||| |||||||||||||||||||||| |||| | |||| |||||| |||| |||| || ||||||||| |||||| ||||||    
T  31271624 cgggctggcccgatagcccgggagcccgtatagggccgggctcgggctctaatatttcagcccgtatttaaaccggactttttagcccggcccgaaaaag 31271525  T
Q  383 cccg 386  Q
    ||||    
T  31271524 cccg 31271521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 284 - 367
Target Start/End: Original strand, 41202597 - 41202680
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttag 367  Q
    |||||||||||||||||||| ||| |||| ||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||    
T  41202597 gggctggcccgttagcccgggagctcgtaaagggccgggctcgggctctatttttccagcccatattcaaaccgggctttttag 41202680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 39489149 - 39489006
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||| | ||||||||||||| ||||  || || ||||||||||||||||              ||||||| ||||||    
T  39489149 gggctggcccgttagcccgggagcccgaagagggccgggctcgggctcattttttgcagcccatattcaaacc-------------cggcccttaaaagc 39489063  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  39489062 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 39489006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 385
Target Start/End: Original strand, 4267652 - 4267732
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagccc 385  Q
    |||||||| ||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||| || |||| ||||||||    
T  4267652 agcccgtaaagggccgggctcgggctctatttttccagcccatattcaaaccgggctttttagcccgacccttaaaagccc 4267732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 19106601 - 19106668
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatatt 350  Q
    |||| |||||||||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||    
T  19106601 cgggatggcccgttagcccgggagcccgtataggaccgggctcgggctcaattattccagcccatatt 19106668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 40921284 - 40921241
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  40921284 gggccggccctaaacgggtcgggccgcccgttttgacagctcta 40921241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 723
Target Start/End: Complemental strand, 26918011 - 26917973
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaa 723  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  26918011 tatagctcagtagtactactaagtactaccccactaaaa 26917973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 670
Target Start/End: Original strand, 47115688 - 47115730
Alignment:
Q  628 ggggtgcaaacagctcaatggatttgggcctccttaaggtatg 670  Q
    |||||||||||||||||||||| |||| |||||||||||||||    
T  47115688 ggggtgcaaacagctcaatggagttggacctccttaaggtatg 47115730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 734
Target Start/End: Original strand, 7398230 - 7398278
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaacaaatccttat 734  Q
    |||||||||||||||||||||||||||||||| |||||| |||| |||||    
T  7398230 tatagcccagtagtactactaagtactacccc-ctaaaaaaaattcttat 7398278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 440
Target Start/End: Original strand, 33605168 - 33605313
Alignment:
Q  296 tagcccggaagcccgtatagggccgggctcgagctccattattccagcccatatt-caaacagggctttttagctcggccctaaaaagcccgttgtccga 394  Q
    |||||||| |||||| ||||||||||||||| |||| ||| ||| |||||||||| ||  | ||| ||||| || |||||| | ||||||||  | ||||    
T  33605168 tagcccgggagcccgcatagggccgggctcgggctctatttttcgagcccatattacaccctgggttttttggcccggcccgataaagcccgaagcccga 33605267  T
Q  395 ccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||||| ||     | | | |||||||||||||||||||||||    
T  33605268 ccgggccggcccgtttagagccaggccgcccgttttgacagctcta 33605313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 717
Target Start/End: Complemental strand, 9021992 - 9021960
Alignment:
Q  685 tatagcccagtagtactactaagtactacccca 717  Q
    |||||||||||||||||||||||||||||||||    
T  9021992 tatagcccagtagtactactaagtactacccca 9021960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 729
Target Start/End: Complemental strand, 36903626 - 36903582
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaacaaatc 729  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||    
T  36903626 tatagtccagtagtactactaagtactaccctactaaaataaatc 36903582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 21104290 - 21104446
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  21104290 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 21104389  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  21104390 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 21104446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 283 - 406
Target Start/End: Complemental strand, 26555955 - 26555832
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  26555955 cgggctggcccgttagcccgggagcctgtatagggccgggctcgggctccattatttcagcccatatttaaacagggctttttagcccggccctaaaaag 26555856  T
Q  383 cccgttgtccgaccgggccgggcc 406  Q
    ||||||||||||||||||||||||    
T  26555855 cccgttgtccgaccgggccgggcc 26555832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 15613461 - 15613306
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||   ||||||||| |||| ||| |||| ||| ||||||| ||||||    
T  15613461 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctctattttttaggcccatatttaaaccgggatttt-agcccggccctcaaaagc 15613363  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||||| |||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  15613362 ccgttgcccgttcgggccgagcctaaacgggtcgggccgcccgttttgacagctcta 15613306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 283 - 406
Target Start/End: Complemental strand, 4470022 - 4469899
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||  ||||||||| ||| |||||||||    
T  4470022 cgggctggcccgttagcccgggagcccgtatagggccgggctcgggctccattatttcagtccatattcaaacagatctttttagcccgggcctaaaaag 4469923  T
Q  383 cccgttgtccgaccgggccgggcc 406  Q
    |  |||| ||||| ||||||||||    
T  4469922 catgttgcccgactgggccgggcc 4469899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 284 - 434
Target Start/End: Original strand, 17921483 - 17921632
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||| | |||||| | ||||||||||||| |||| ||| |||||||||||||||||||  ||||||||||| ||||||| ||||||    
T  17921483 gggctggcccgttagcccaggagcccgcaaagggccgggctcgggctctatt-ttccagcccatattcaaaccaggctttttagcccggcccttaaaagc 17921581  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgaca 434  Q
    || | |  || || ||||||||||||||||| |||||||||||||||||||    
T  17921582 ccttggctcggccaggccgggcctaaacgggccgggccgcccgttttgaca 17921632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 305 - 442
Target Start/End: Complemental strand, 15560380 - 15560243
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccggg 404  Q
    |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||| | ||||||| |||| ||| | | ||| |||||||||     
T  15560380 agcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttaacccggcccttaaaatcccttggcccggccgggccgga 15560281  T
Q  405 cctaaacgggtcgggccgcccgttttgacagctctata 442  Q
    |||||||||| |||||||||||||||||||||||||||    
T  15560280 cctaaacgggccgggccgcccgttttgacagctctata 15560243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 42730173 - 42730052
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    ||||||||||||||||| |||||| |||| ||||||||||||| |||| ||| || ||||||||||||||||||||||||| ||| ||||||| ||||||    
T  42730173 gggctggcccgttagcctggaagcacgtacagggccgggctcgggctctattttttcagcccatattcaaacagggcttttcagcccggcccttaaaagc 42730074  T
Q  384 ccgttgtccgaccgggccgggc 405  Q
    |||||  |||| ||||||||||    
T  42730073 ccgttacccgatcgggccgggc 42730052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 38837439 - 38837283
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||| |||||| |||||  |||| |||| |||||||||||| |||||||||||||     
T  38837439 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctctattatttcagcctgtatttaaaccgggctttttagcccggccctaaaaagt 38837340  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    | |  | ||| || |||||| || ||||||| ||||  |||| ||||||||||||||    
T  38837339 ctgaagcccgtccaggccggcccgaaacgggccgggtagcccattttgacagctcta 38837283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 291 - 406
Target Start/End: Complemental strand, 40860846 - 40860731
Alignment:
Q  291 cccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgt 390  Q
    ||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| |||||||| | |     
T  40860846 cccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagcccttggc 40860747  T
Q  391 ccgaccgggccgggcc 406  Q
    ||| ||||||||||||    
T  40860746 ccggccgggccgggcc 40860731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 29205808 - 29205686
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  29205808 gggctggcccgttagcccgggagctcgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 29205709  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    || | | | | ||||||||||||    
T  29205708 ccttggccgggccgggccgggcc 29205686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 289 - 385
Target Start/End: Complemental strand, 40000603 - 40000507
Alignment:
Q  289 ggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagccc 385  Q
    ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||||    
T  40000603 ggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagccc 40000507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 25096569 - 25096687
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccatta-ttccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||| ||||| || |||||||||||||||| |||||||||||| ||||||| |||||    
T  25096569 gggccggcccgttagcccgggagcccgtatagggccgggctcgggct-cattatttgcagcccatattcaaaccgggctttttagcccggcccttaaaag 25096667  T
Q  383 cccgttgtccgaccgggccg 402  Q
    ||| | | ||| ||||||||    
T  25096668 cccttggcccggccgggccg 25096687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 9471630 - 9471731
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||| ||||||||||||| |||||||| ||||||||||||| |||| ||| || |||||||||||||||| |||||||||||| ||| ||| ||||||    
T  9471630 gggctgccccgttagcccgggagcccgtaaagggccgggctcgggctctattttttcagcccatattcaaactgggctttttagcccgggccttaaaagc 9471729  T
Q  384 cc 385  Q
    ||    
T  9471730 cc 9471731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 297 - 440
Target Start/End: Complemental strand, 20922030 - 20921886
Alignment:
Q  297 agcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggcttttt-agctcggccctaaaaagcccgttgtccgac 395  Q
    ||||||| || |||||||||||||  |||| |||| |||||||||||||||||| |||| ||||||||| |||||||||| |||||||  |||  ||       
T  20922030 agcccgggagtccgtatagggccgcactcgggctcaattattccagcccatatttaaaccgggctttttcagctcggcccaaaaaagcttgttacccagt 20921931  T
Q  396 cgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    | |||||||||||| || ||| |||||||||||||||||||||||    
T  20921930 caggccgggcctaagcgagtctggccgcccgttttgacagctcta 20921886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 5271918 - 5272040
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| | ||||||| |||  |||||||| ||| || | ||||||||     
T  5271918 gggctggcccgttagcccagaagcccgtatagggccgggctcgggctccatttttccggtccatatttaaagcgggcttttcagcccgactctaaaaaga 5272017  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    ||||||    |||||||||||||    
T  5272018 ccgttgcttaaccgggccgggcc 5272040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 38571366 - 38571464
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaa 381  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||| |||||| |||||| |||| |||  |||||||||||| | ||||||||||    
T  38571366 cgggctggcccgttagtccgagagcccgtatagggccgggctcgagctctattattacagcccgtatttaaatcgggctttttagcccagccctaaaaa 38571464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 445
Target Start/End: Original strand, 30556239 - 30556287
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctctatatat 445  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  30556239 gggccggccctaaacgggccgggccgcccgttttgacaactctatatat 30556287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 10710422 - 10710465
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  10710422 gggccggccctaaacgggccgggccgcccgttttgacagctcta 10710465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 19944273 - 19944238
Alignment:
Q  405 cctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| ||||||||||||||||||||||||||||    
T  19944273 cctaaacaggtcgggccgcccgttttgacagctcta 19944238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 25868414 - 25868379
Alignment:
Q  405 cctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||||||||||||||||||||||||||||| |||||    
T  25868414 cctaaacgggtcgggccgcccgttttgacaactcta 25868379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 723
Target Start/End: Complemental strand, 11952935 - 11952897
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaa 723  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  11952935 tatagccctgtagtactactaagtactactccactaaaa 11952897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 722
Target Start/End: Original strand, 29694103 - 29694194
Alignment:
Q  631 gtgcaaacagctcaatggatttgggcctccttaaggtatgggcttnnnnnnntatatagcccagtagtactactaagtactaccccactaaa 722  Q
    ||||||| |||||||||||  |||||||||||||||||||||  |         ||||||||| ||||||||||||||||||| || |||||    
T  29694103 gtgcaaagagctcaatggagctgggcctccttaaggtatgggtctaaaaaaaattatagcccactagtactactaagtactactccgctaaa 29694194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 673
Target Start/End: Complemental strand, 21190976 - 21190931
Alignment:
Q  628 ggggtgcaaacagctcaatggatttgggcctccttaaggtatgggc 673  Q
    ||||||||||||||||||||||  |||||||||  |||||||||||    
T  21190976 ggggtgcaaacagctcaatggagctgggcctccccaaggtatgggc 21190931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 673
Target Start/End: Original strand, 30175535 - 30175580
Alignment:
Q  628 ggggtgcaaacagctcaatggatttgggcctccttaaggtatgggc 673  Q
    ||||||||||||||||||||||  |||||||||  |||||||||||    
T  30175535 ggggtgcaaacagctcaatggagctgggcctccccaaggtatgggc 30175580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 723
Target Start/End: Complemental strand, 37622643 - 37622614
Alignment:
Q  694 gtagtactactaagtactaccccactaaaa 723  Q
    ||||||||||||||||||||||||||||||    
T  37622643 gtagtactactaagtactaccccactaaaa 37622614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 722
Target Start/End: Original strand, 38400574 - 38400611
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaa 722  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  38400574 tatagtccaatagtactactaagtactaccccactaaa 38400611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 673
Target Start/End: Complemental strand, 45156397 - 45156352
Alignment:
Q  628 ggggtgcaaacagctcaatggatttgggcctccttaaggtatgggc 673  Q
    ||||||||||||||||||||||  |||||||||  |||||||||||    
T  45156397 ggggtgcaaacagctcaatggagctgggcctccccaaggtatgggc 45156352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 9936 - 9780
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||| | ||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  9936 gggctggcccgttagcccgggagcccgaagagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 9837  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  9836 ccttggcccggccgggccgggcctaaacgggccgggccgcccgttttgacagctcta 9780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 11369359 - 11369202
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattc-cagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || ||  |||||||||||||||| |||||||||||| ||||||| |||||    
T  11369359 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcatttttttgcagcccatattcaaaccgggctttttagcccggcccttaaaag 11369260  T
Q  383 cccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||| | | ||| ||||||| |||||||||||| |||||||||||||||||||||||||    
T  11369259 cccttggcccggccgggccaggcctaaacgggccgggccgcccgttttgacagctcta 11369202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 26519856 - 26520012
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||| ||| || |||||||||||||||| ||||||||| || ||||||| ||||||    
T  26519856 gggctggcccgttagcccgggaacccgtatagggtcgggctcgggctctatttttgcagcccatattcaaactgggctttttcgcccggcccttaaaagc 26519955  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | ||| |||||||||||||||||||| | |||| ||||||||||||||||||    
T  26519956 ccttggcccggccgggccgggcctaaacgggccaggccacccgttttgacagctcta 26520012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 15071092 - 15071248
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  15071092 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 15071191  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || | | |||  | ||||| ||||||||||  |||||||||||||||||||||||||    
T  15071192 ccttggcccggtccggccgagcctaaacggaccgggccgcccgttttgacagctcta 15071248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 283 - 440
Target Start/End: Complemental strand, 31655009 - 31654852
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccata-ttcaaacagggctttttagctcggccctaaaaa 381  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| || |||| ||||||||| || |||||||||| |    
T  31655009 cgggctggcccgttagcccgggagcccgtatagggccgggctcgggctcaattattccagcccatattttaaaccgggctttttggcccggccctaaata 31654910  T
Q  382 gcccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||||    |||||| ||||||||| ||||||| ||||  |||||||||||||||||||    
T  31654909 gcccgcaacccgacc-ggccgggccgaaacgggccgggtagcccgttttgacagctcta 31654852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 283 - 386
Target Start/End: Complemental strand, 17878335 - 17878232
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaag 382  Q
    ||||||||||||||||||||| |||||||||||| |||| |||  |||| ||||||||||||| |||| ||| ||||||||||||| |||||||||||||    
T  17878335 cgggctggcccgttagcccgggagcccgtataggaccggactcaggctctattattccagcccgtatttaaatagggctttttagcccggccctaaaaag 17878236  T
Q  383 cccg 386  Q
    ||||    
T  17878235 cccg 17878232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 284 - 387
Target Start/End: Original strand, 20143580 - 20143683
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  || |||  ||||||||| |||| |||||||||||| ||||||| ||||||    
T  20143580 gggctggcccgttagcccggaagcccgtatagggccgggctcgggctctctttttcaggcccatatttaaactgggctttttagcccggccctcaaaagc 20143679  T
Q  384 ccgt 387  Q
    ||||    
T  20143680 ccgt 20143683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 22189259 - 22189156
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  || |||  ||||||||| |||| |||||||||||| ||||||| ||||||    
T  22189259 gggctggcccgttagcccggaagcccgtatagggccgggctcgggctctctttttcaggcccatatttaaactgggctttttagcccggccctcaaaagc 22189160  T
Q  384 ccgt 387  Q
    ||||    
T  22189159 ccgt 22189156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 305 - 443
Target Start/End: Complemental strand, 12075956 - 12075818
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccggg 404  Q
    |||||||| |||||  |||||| |||| ||| ||| ||||||||||||||| |||||||||||| || |||| |||||||| | | | | || |||||||    
T  12075956 agcccgtaaagggctaggctcgggctctatttttctagcccatattcaaaccgggctttttagcccgacccttaaaagcccttggcctggcccggccggg 12075857  T
Q  405 cctaaacgggtcgggccgcccgttttgacagctctatat 443  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  12075856 cctaaacggaccgggccgcccgttttgacagctctatat 12075818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 17868551 - 17868449
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||| |||| |||  |||| ||||||||||||| |||| ||| ||||||||||||| ||||||||||||||    
T  17868551 gggctggcccgttagcccgggagcccgtataggaccggactcaggctctattattccagcccgtatttaaatagggctttttagcccggccctaaaaagc 17868452  T
Q  384 ccg 386  Q
    |||    
T  17868451 ccg 17868449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 284 - 375
Target Start/End: Complemental strand, 31471066 - 31470975
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccc 375  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||| ||| || |||||||||||||||  |||||||||||| ||||||    
T  31471066 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctctatttttgcagcccatattcaaatcgggctttttagcccggccc 31470975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 298 - 440
Target Start/End: Complemental strand, 12271518 - 12271376
Alignment:
Q  298 gcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccg 397  Q
    |||||| |||||||| ||||||||||||| |||| ||| || |||||||||||||||| || ||||||||| ||| ||| |||||||| | | ||    |    
T  12271518 gcccgggagcccgtaaagggccgggctcgggctctattttttcagcccatattcaaaccggactttttagcccggtccttaaaagcccttggcccagttg 12271419  T
Q  398 ggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||    
T  12271418 ggccgggcctaaatgggccgggccgcccattttgacagctcta 12271376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 305 - 440
Target Start/End: Original strand, 3044997 - 3045132
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccggg 404  Q
    |||| ||| ||||||||| ||| |||  ||| ||||||||||||||||||||| |||||| ||| ||||||| |||||||||||  |||   |||| |||    
T  3044997 agcctgtacagggccgggatcgggctttatttttccagcccatattcaaacagagcttttcagcccggcccttaaaagcccgttacccggttgggctggg 3045096  T
Q  405 cctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||| |||||||||||||  |||||||||||||||||    
T  3045097 cctgaacgggtcgggccttccgttttgacagctcta 3045132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 287 - 439
Target Start/End: Complemental strand, 27965927 - 27965775
Alignment:
Q  287 ctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccg 386  Q
    |||| ||| |||||||| ||||| |||||||||| ||||| |||| | ||||||||||| |||| |||| |||||||||||| |||||| ||||||||||    
T  27965927 ctggtccgatagcccgggagcccatatagggccgtgctcgggctctaatattccagcccgtatttaaaccgggctttttagcccggcccaaaaaagcccg 27965828  T
Q  387 ttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctct 439  Q
     || |||  ||||| || ||  |||||  ||||  ||||||||||||||||||    
T  27965827 ctgcccgttcgggctggcccggaacggaccgggtagcccgttttgacagctct 27965775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 305 - 385
Target Start/End: Original strand, 10998046 - 10998126
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagccc 385  Q
    |||||||||||||||||||||| ||||  || || |||||||||||||||| || ||||||||| ||||||| ||||||||    
T  10998046 agcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccggactttttagcccggcccttaaaagccc 10998126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 734
Target Start/End: Complemental strand, 2477908 - 2477859
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaacaaatccttat 734  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  2477908 tatagcccagtagtactactaagtactaccccattaaaaaaaatccttat 2477859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 704 - 782
Target Start/End: Original strand, 27994347 - 27994426
Alignment:
Q  704 taagtactaccccactaaaacaaatc-cttatgagaactctgatactacctgtgtttctttccttattctctttctctct 782  Q
    |||||||||| ||||| ||| ||||  ||||||||||||||||||  | | |||||||||||||||||||||||||||||    
T  27994347 taagtactactccacttaaaaaaatttcttatgagaactctgatatcatccgtgtttctttccttattctctttctctct 27994426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 721
Target Start/End: Original strand, 4036860 - 4036896
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaa 721  Q
    |||||||||||||||||||||||||||| ||||||||    
T  4036860 tatagcccagtagtactactaagtactatcccactaa 4036896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 32464906 - 32464863
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||||||||||||||||  |||||||||||||||||    
T  32464906 gggccggccctaaacgggtcgggccatccgttttgacagctcta 32464863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 7e-39; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 290 - 440
Target Start/End: Original strand, 33189317 - 33189467
Alignment:
Q  290 gcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttg 389  Q
    |||||||||||||| |||||||||||||||||||||| ||||  || || ||||||||||| ||||  ||||||||||| ||||||| |||||||| | |    
T  33189317 gcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatatttaaacctggctttttagcccggcccttaaaagcccttgg 33189416  T
Q  390 tccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
     ||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  33189417 cccggccgggccgggcctaaacgggctgggccgcccgttttgacagctcta 33189467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 4221851 - 4222007
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||| ||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||| |||||||||||| ||||||||||||||    
T  4221851 gggctggcccgttagctcgggagcccgtatagggccgggctcgggctctatttttccagcccatatttaaaccgggctttttagcccggccctaaaaagc 4221950  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || |   ||   |||||| ||| |||||||||||| ||| |||||||||||||||||    
T  4221951 ccttgcccccgtcgggcccggcttaaacgggtcggcccgtccgttttgacagctcta 4222007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 9660639 - 9660488
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||  || || |||||||||||||||| |||||||||||| |  |||| ||||||    
T  9660639 gggccggcccgttagcccgggagcccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccaacccttaaaagc 9660540  T
Q  384 ccgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    || |     | || ||||||||||||||||| |||||||||||||||||||||||||    
T  9660539 cctt-----ggcccggccgggcctaaacgggccgggccgcccgttttgacagctcta 9660488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 278 - 386
Target Start/End: Complemental strand, 43263282 - 43263174
Alignment:
Q  278 acatccgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggcccta 377  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||| |||| |||||||||||  ||||||||    
T  43263282 acatgcgggctggcccattagcccgggagcccgtatagggccgggctcgagctctattatttcagcccgtatttaaaccgggctttttagtccggcccta 43263183  T
Q  378 aaaagcccg 386  Q
    |||||||||    
T  43263182 aaaagcccg 43263174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 46158358 - 46158480
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||| ||| |||  ||||||||| |||| |||||||||||| ||||||| ||||||    
T  46158358 gggctggcccgttagcccgggagcccgtatagggccgggctcgggctctatttttcaggcccatatttaaaccgggctttttagcccggccctcaaaagc 46158457  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    ||||||  ||  |||||||||||    
T  46158458 ccgttgctcgttcgggccgggcc 46158480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 45757055 - 45756955
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||| |||| || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  45757055 gggccggcccgttagcccgggagcccgtatagggccgggctcgggct-catttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 45756957  T
Q  384 cc 385  Q
    ||    
T  45756956 cc 45756955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 285 - 440
Target Start/End: Original strand, 45566539 - 45566693
Alignment:
Q  285 ggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcc 384  Q
    |||||||| ||||||| || |||||||| || |||||||||| |||| ||| ||| ||||||||||||||| |||||||||||| ||||||| |||||||    
T  45566539 ggctggcctgttagccggggagcccgtaaagagccgggctcgggctctatttttc-agcccatattcaaaccgggctttttagcccggcccttaaaagcc 45566637  T
Q  385 cgttgtccgaccgggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
      | | ||| || |||| |||||||||||| ||| ||| ||||||| |||||||||    
T  45566638 attggcccggcccggccaggcctaaacgggccggaccgtccgtttttacagctcta 45566693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 12749875 - 12749997
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||||| |||||| | ||||||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  12749875 gggctggcccgttagcccgggagcccgaagagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 12749974  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    || | | |||  |||||||||||    
T  12749975 ccttggcccggtcgggccgggcc 12749997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 283 - 414
Target Start/End: Complemental strand, 31488946 - 31488814
Alignment:
Q  283 cgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccata-ttcaaacagggctttttagctcggccctaaaaa 381  Q
    ||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||| || |||| || ||||||  | | ||||||||||    
T  31488946 cgggctggcccgttagcccgggagcccgtatagggccgggttcaagctcaattattccagcccatattttaaaccggactttttgacccagccctaaaaa 31488847  T
Q  382 gcccgttgtccgaccgggccgggcctaaacggg 414  Q
     ||||    |||||||||||||||| |||||||    
T  31488846 acccgcaacccgaccgggccgggccgaaacggg 31488814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 17332081 - 17332198
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||||||||||||||| | |||||||| ||||||||||||| |||| ||| ||||| |||||||||||||  ||||||||||| ||||||| ||||||    
T  17332081 gggctggcccgttagcccaggagcccgtaaagggccgggctcgggctctatttttccaacccatattcaaac-cggctttttagcccggcccttaaaagc 17332179  T
Q  384 ccgttgtccgaccgggccg 402  Q
    || | | ||| ||||||||    
T  17332180 ccttggcccggccgggccg 17332198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 43780986 - 43780864
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||| ||||| ||||||||| ||||||||||| |||||||||| ||||  || || |||||||||||||||| |||||||||||| ||||||| ||||||    
T  43780986 gggccggcccattagcccgggagcccgtatagagccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagcccggcccttaaaagc 43780887  T
Q  384 ccgttgtccgaccgggccgggcc 406  Q
    || | | ||| || |||||||||    
T  43780886 ccttggcccggccaggccgggcc 43780864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 47188361 - 47188277
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagc 368  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||  || || |||||||||||||||| ||||||||||||    
T  47188361 gggctggcccgttagcccgggaacccgtatagggccgggctcgggctcattttttgcagcccatattcaaaccgggctttttagc 47188277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 305 - 440
Target Start/End: Original strand, 32058147 - 32058282
Alignment:
Q  305 agcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagcccgttgtccgaccgggccggg 404  Q
    |||||||| ||||||||||||| | || | | |||||| |||||||||||| || ||||||||| || |||| |||||||| |   |||  |||||||||    
T  32058147 agcccgtaaagggccgggctcgggttctacttttccagtccatattcaaactggactttttagcccgacccttaaaagcccttgacccggtcgggccggg 32058246  T
Q  405 cctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    | |||||||| |||| ||||||||||||||||||||    
T  32058247 cttaaacgggccggggcgcccgttttgacagctcta 32058282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 48469727 - 48469626
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaagc 383  Q
    |||||| |||||||||||| ||||||||| ||||||||||| | |||| ||| |||||||||| ||||||||  ||||||||||| ||| ||| ||||||    
T  48469727 gggctgtcccgttagcccgaaagcccgtaaagggccgggcttgggctctatttttccagcccaaattcaaaccaggctttttagcccggtccttaaaagc 48469628  T
Q  384 cc 385  Q
    ||    
T  48469627 cc 48469626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 45040086 - 45040178
Alignment:
Q  275 ggtacatccgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttag 367  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||| |||| |||| || |||||||||  |||| ||| |||| |||||||    
T  45040086 ggtacatgcgggctggcccgttagcccgggagcccgtataaggccggactcgggctctatgattccagcctgtatttaaatagggttttttag 45040178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 24682386 - 24682295
Alignment:
Q  290 gcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaa 381  Q
    ||||||||||||||  ||||||||||| ||||||||| |||| || ||||||||||||||| || | |||||||| | | ||||||||||||    
T  24682386 gcccgttagcccgggtgcccgtataggcccgggctcgggctctataattccagcccatatttaatccgggcttttcatcccggccctaaaaa 24682295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 49228603 - 49228501
Alignment:
Q  284 gggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagccc-atattcaaacagggctttttagctcggccctaaaaag 382  Q
    ||||||||||||||| || | |||||||| ||||||| ||||| |||| | | ||||||||| |||||||||| || ||||||||| ||||||| |||||    
T  49228603 gggctggcccgttagtccaggagcccgtaaagggccgagctcgggctctacttttccagccccatattcaaaccggcctttttagcccggccctcaaaag 49228504  T
Q  383 ccc 385  Q
    |||    
T  49228503 ccc 49228501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 368
Target Start/End: Original strand, 6502009 - 6502087
Alignment:
Q  290 gcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagc 368  Q
    |||||| ||||||| || ||||| |||||||| |||| |||| ||| ||||||||||||||||||| || |||||||||    
T  6502009 gcccgtaagcccgggagtccgtaaagggccggactcgggctctatttttccagcccatattcaaaccggactttttagc 6502087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 723
Target Start/End: Complemental strand, 39135052 - 39135014
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaaa 723  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  39135052 tatagcccagtagtactactaagtactaccccagtaaaa 39135014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 721
Target Start/End: Complemental strand, 10926276 - 10926240
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaa 721  Q
    |||||||||||| ||||||||||||||||||||||||    
T  10926276 tatagcccagtattactactaagtactaccccactaa 10926240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 23973680 - 23973640
Alignment:
Q  400 ccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  23973680 ccggccctaaacgggccgggccgcccgttttgacagctcta 23973640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 721
Target Start/End: Original strand, 50146112 - 50146148
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaa 721  Q
    ||||||||||| |||||||||||||||||||||||||    
T  50146112 tatagcccagtggtactactaagtactaccccactaa 50146148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 700561 - 700604
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||    
T  700561 gggccggccctaaacgggccgggtcgcccgttttgacagctcta 700604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 28472851 - 28472822
Alignment:
Q  412 gggtcgggccgcccgttttgacagctctat 441  Q
    ||||||||||||||||||||||||||||||    
T  28472851 gggtcgggccgcccgttttgacagctctat 28472822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 50511466 - 50511429
Alignment:
Q  405 cctaaacgggtcgggccgcccgttttgacagctctata 442  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  50511466 cctaaacgggccggaccgcccgttttgacagctctata 50511429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 282 - 385
Target Start/End: Complemental strand, 16532 - 16435
Alignment:
Q  282 ccgggctggcccgttagcccggaagcccgtatagggccgggctcgagctccattattccagcccatattcaaacagggctttttagctcggccctaaaaa 381  Q
    |||||||||||||||||||||| |||||||||||||||||      ||||  || || |||||||||||||||| |||||||||||| || |||| ||||    
T  16532 ccgggctggcccgttagcccgggagcccgtatagggccgg------gctcattttttgcagcccatattcaaaccgggctttttagcccgacccttaaaa 16439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 51811 - 51854
Alignment:
Q  397 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 440  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  51811 gggccggccctaaacgggtcgggccgcccgttttgacagctcta 51854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 728 - 782
Target Start/End: Original strand, 15748 - 15801
Alignment:
Q  728 tccttatgagaactctgatactacctgtgtttctttccttattctctttctctct 782  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||||||||||||    
T  15748 tccttatgagaactctaataccacca-tgtttctttccttattctctttctctct 15801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 722
Target Start/End: Original strand, 1131 - 1168
Alignment:
Q  685 tatagcccagtagtactactaagtactaccccactaaa 722  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  1131 tatagctcagtggtactactaagtactaccccactaaa 1168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University