View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10901_low_23 (Length: 242)
Name: NF10901_low_23
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 8474195 - 8474409
Alignment:
| Q |
11 |
cagcacagatgaagttgacgaaaacatatgaaatgcaatttagctgcaagtctctgatcttgatagtcgttttttcttgggaagctccaaagtttagatg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8474195 |
cagcacagatgaagttgacgaaaacatatgaaatgcaatttagctgcaagtatctgatcttgatagtcgttttttcttgggaagctccaaagtttagatg |
8474294 |
T |
|
| Q |
111 |
gcactagaaatttatttactcatgttattctgatattcatcaatgtgaatgttttcaatgcggcttgtttgttcacatgaaagacataattcactggttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8474295 |
gcactagaaatttatttactcatgttattctgatattcatcaatgtgaatgttttcaatgcggcttgtttgtacacatgaaagacataattcactggttt |
8474394 |
T |
|
| Q |
211 |
catcatcttagatgt |
225 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
8474395 |
catcatcttatatgt |
8474409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University