View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10901_low_25 (Length: 236)

Name: NF10901_low_25
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10901_low_25
NF10901_low_25
[»] chr2 (1 HSPs)
chr2 (18-212)||(40820042-40820236)
[»] chr4 (3 HSPs)
chr4 (72-211)||(21173502-21173641)
chr4 (80-211)||(53557002-53557133)
chr4 (147-211)||(40254617-40254681)
[»] chr7 (1 HSPs)
chr7 (90-212)||(41208793-41208915)
[»] chr3 (1 HSPs)
chr3 (146-211)||(47847051-47847116)
[»] chr5 (1 HSPs)
chr5 (84-211)||(5113168-5113295)
[»] chr1 (2 HSPs)
chr1 (80-211)||(4685350-4685481)
chr1 (146-211)||(4612023-4612088)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 40820042 - 40820236
Alignment:
Q  18 tatataacaattatataacttgatcaagcatttttcatgaaataccaagagttcttaccagctttttgaggaagagaaatccaatttccaccagttccat 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40820042 tatataacaattatataacttcatcaagcatttttcatgaaataccaagaattcttaccagctttttgaggaagagaaatccaatttccaccagttccat 40820141  T
Q  118 gcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttcttcacatttgctttgtcacagcaaggagctcttcccatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40820142 gcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcacatttgctttgtcacagcaaggagctcttcccatt 40820236  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 21173641 - 21173502
Alignment:
Q  72 ttaccagctttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctt 171  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||| || ||||| ||||||| |||||||||||||||||| || |||     
T  21173641 ttaccagctttatgaggaagagaaatccaatttccaccagtgccatgtttctctatgtaatctttaagctttgaatcttcttctggtgaccatggacctc 21173542  T
Q  172 tcttcacatttgctttgtcacagcaaggagctcttcccat 211  Q
    |||| ||| ||| ||||||||| || ||||||||||||||    
T  21173541 tcttaacacttgttttgtcacaacatggagctcttcccat 21173502  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 53557133 - 53557002
Alignment:
Q  80 tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttcttcaca 179  Q
    |||||||||||||| |||||||||||| ||||||||||   |||| || ||   ||||||  | | ||||||||| || ||||| ||||||||||||||     
T  53557133 tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg 53557034  T
Q  180 tttgctttgtcacagcaaggagctcttcccat 211  Q
    || || ||||||||||| |||||||| |||||    
T  53557033 ttagccttgtcacagcatggagctctacccat 53557002  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 40254617 - 40254681
Alignment:
Q  147 tcttcttctggtgaccagggtcctttcttcacatttgctttgtcacagcaaggagctcttcccat 211  Q
    |||||||| |||||||| || ||| |||| ||||| ||||||||||| ||||||||||| |||||    
T  40254617 tcttcttcaggtgaccatggacctctcttgacattggctttgtcacaacaaggagctctccccat 40254681  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 41208793 - 41208915
Alignment:
Q  90 agagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttcttcacatttgctttgt 189  Q
    |||| |||||| ||||| ||||||||||| || ||||| || || || || |||| ||||||||| || ||||| || |||||||| ||||| |||||||    
T  41208793 agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt 41208892  T
Q  190 cacagcaaggagctcttcccatt 212  Q
    |||||||||||| ||||||||||    
T  41208893 cacagcaaggagatcttcccatt 41208915  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 47847051 - 47847116
Alignment:
Q  146 atcttcttctggtgaccagggtcctttcttcacatttgctttgtcacagcaaggagctcttcccat 211  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||    
T  47847051 atcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcacagcaaggtgcccttcccat 47847116  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 5113295 - 5113168
Alignment:
Q  84 tgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttcttcacatttg 183  Q
    ||||| |||| |||||||||||||||||| ||||  | |||||| ||    ||||| || | ||||||||| |||||||| || ||||| || ||||| |    
T  5113295 tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg 5113196  T
Q  184 ctttgtcacagcaaggagctcttcccat 211  Q
    ||||||||||||||||||||||||||||    
T  5113195 ctttgtcacagcaaggagctcttcccat 5113168  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 4685481 - 4685350
Alignment:
Q  80 tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttcttcaca 179  Q
    |||||| || |||| |||||| || |||||||| ||||| | |||||| ||   |||||| || | |||||||||||| ||||| || |||||||||||     
T  4685481 tttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacg 4685382  T
Q  180 tttgctttgtcacagcaaggagctcttcccat 211  Q
    |||||||||||||| ||||||||||| |||||    
T  4685381 tttgctttgtcacaacaaggagctctacccat 4685350  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 4612023 - 4612088
Alignment:
Q  146 atcttcttctggtgaccagggtcctttcttcacatttgctttgtcacagcaaggagctcttcccat 211  Q
    |||||| || || ||||| |||||| |||| || ||| |||||||||| |||||||||||||||||    
T  4612023 atcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccat 4612088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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