View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10901_low_6 (Length: 407)
Name: NF10901_low_6
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_low_6 |
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| [»] scaffold0179 (2 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 1922 - 2251
Alignment:
| Q |
1 |
tactttttgttactctaattcttcatatttaaattggaatgaaatttgaggattggtaatattgatatgcacatcaactgcttccaatttctctctaaac |
100 |
Q |
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| T |
1922 |
tactttttgttactctaattcttcatatttaaattggaatgaaatttgaggattggtaatattgatatgcacatcaactgcttccaatttctctctaaac |
2021 |
T |
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| Q |
101 |
cttggcagcaacataagaaaaaatgaattatgctgtatatactcaagaaaaacttacagactagttgataaccatgttgtatatactcatcacaaccctc |
200 |
Q |
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| T |
2022 |
cttggcagcaacataagaaaaaatgaattatgctgtatatactcaagaaaaacttacagactagttgataaccaagttgtatatactcatcacaaccctc |
2121 |
T |
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| Q |
201 |
tagtttctctgtaacttaatggccgcaag-nnnnnnnntggagagtttttattgtctgtgaggttcactttcattgctggggtagcaattatgctgcaga |
299 |
Q |
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| T |
2122 |
tagtttctctgtaacttaatggccgcaagaaaaaaaaatggacagtttttattgtctgtgaggttcactttcattgttggggtagcaattatgctgcaga |
2221 |
T |
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| Q |
300 |
agctacagttattagcccctaaaccaaatt |
329 |
Q |
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| T |
2222 |
aggtacagttattagcccctaaaccaaatt |
2251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 2297 - 2355
Alignment:
| Q |
339 |
gttatttaggtaggggagggtccaggtgagaggcaataaaacagtggttagtctctctg |
397 |
Q |
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| T |
2297 |
gttatttaggtaggggagggtctaggtgagagccattaaaaaagtggttagtctctctg |
2355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15719341 - 15719278
Alignment:
| Q |
1 |
tactttttgttactctaattcttcatatttaaattggaatgaaatttgaggattggtaatattg |
64 |
Q |
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| T |
15719341 |
tactttttgtttctctaaatcttcatatttaaattcgaatgcaatttgaggattggtaaaattg |
15719278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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