View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10901_low_8 (Length: 396)
Name: NF10901_low_8
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 130 - 384
Target Start/End: Complemental strand, 16053348 - 16053094
Alignment:
| Q |
130 |
gatagtttggtaatttgaattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaagttgcg |
229 |
Q |
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| T |
16053348 |
gatagtttggtaatttaaattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcagaagaaggatttagtgaagctgtg |
16053249 |
T |
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| Q |
230 |
aggaagcttccgctgttagaaaagcttaacatttcagataccagtctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcac |
329 |
Q |
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| T |
16053248 |
aggaagcttccgctgttagagaagcttgtcatttcagataacaggctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcac |
16053149 |
T |
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| Q |
330 |
ttaaatttagtagattgggggattacgccgccaagccttctgatgatttggcctt |
384 |
Q |
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| T |
16053148 |
ttaaaattagtagattgggggtttatgccgccaagccttctgatgatttggcctt |
16053094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 16053457 - 16053403
Alignment:
| Q |
4 |
atattgagggattcggcaatgat---attcttaattgcatagctaataagtactc |
55 |
Q |
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| T |
16053457 |
atattgagggattcggcaatgatgatattcttaattgcatagctaataagtactc |
16053403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 42563836 - 42563729
Alignment:
| Q |
161 |
agtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatt---tattgaagttgcgaggaagcttccgctgttagaaaagctta |
257 |
Q |
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| T |
42563836 |
agtcacctacgttgcatgcggtttgtaaattgcgaatcaattacggatgaaggattttctagtgaagctgcgagaaagcttcggaaattagacaagcttg |
42563737 |
T |
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| Q |
258 |
acatttca |
265 |
Q |
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|||||||| |
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| T |
42563736 |
acatttca |
42563729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 337
Target Start/End: Complemental strand, 36326001 - 36325811
Alignment:
| Q |
147 |
aattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaagttgcgaggaagcttccgctgtt |
246 |
Q |
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| T |
36326001 |
aattttacagtggcagtcacctactttgcatgcggcttgtaaattgttgggggatgacaaataaaggatttagtgaagccttgagaaagcttccgctgtt |
36325902 |
T |
|
| Q |
247 |
agaaaagcttaacatttcagataccagtctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcacttaaattt |
337 |
Q |
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| T |
36325901 |
agagaaggttgacatttcacattcttatctaactgaggtctctcttgaagcccttggtcgatcttgccctcttttgaaatcgcttaaattt |
36325811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 337
Target Start/End: Complemental strand, 36313623 - 36313433
Alignment:
| Q |
147 |
aattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaagttgcgaggaagcttccgctgtt |
246 |
Q |
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|||||||||||||||| |||||| || |||| || |||||||||||| ||| | ||||||||||||| ||||| || ||| |||||||||| ||| |
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| T |
36313623 |
aattttacagtggcagacacctatgtcgcatggggcttgtagattgctcgaggattacagatgaaggatttagtgaagctgtgagaaagcttccgcggtt |
36313524 |
T |
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| Q |
247 |
agaaaagcttaacatttcagataccagtctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcacttaaattt |
337 |
Q |
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| T |
36313523 |
ggagaaggttgtaatttcacatcactacctaactgatgtctctcttgaagcccttggtcgatcatgccctcttttgaaatcgcttaaattt |
36313433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 36309526 - 36309477
Alignment:
| Q |
147 |
aattttacagtggcagtcacctacgttccatgcggtttgtagattgctat |
196 |
Q |
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|||||| ||||||||||||||| | |||||||||||| |||||||||||| |
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| T |
36309526 |
aattttgcagtggcagtcacctgcattccatgcggttggtagattgctat |
36309477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 29649466 - 29649520
Alignment:
| Q |
210 |
aaggatttattgaagttgcgaggaagcttccgctgttagaaaagcttaacatttc |
264 |
Q |
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| T |
29649466 |
aaggatttattgaagttgcgaaaaagtttccgttgttggaaaagcataacatttc |
29649520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 36327865 - 36327788
Alignment:
| Q |
147 |
aattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaag |
224 |
Q |
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|||||||||||||||||||||||| || |||| || ||||| |||||| | ||| | ||||||||||||| ||||| |
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| T |
36327865 |
aattttacagtggcagtcacctactttgcatggggcttgtaaattgctcgaagattacagatgaaggatttactgaag |
36327788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 36321024 - 36320984
Alignment:
| Q |
147 |
aattttacagtggcagtcacctacgttccatgcggtttgta |
187 |
Q |
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| T |
36321024 |
aattttacagtggcagtcacctacgttgcatgtggcttgta |
36320984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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