View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10901_low_9 (Length: 380)
Name: NF10901_low_9
Description: NF10901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10901_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 55654299 - 55654648
Alignment:
| Q |
1 |
aggaggattattatgggtggaattagggttacaagtcttaccttacctttgggaatcaacttccctattgtgtagctgtagcaaaataatatcgttgcta |
100 |
Q |
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| T |
55654299 |
aggaggattattatgggtggaattagggttacaaatcttaccttacctttgggaatcaacttccctattgtgtagctgtagcaaaataatattgttgcta |
55654398 |
T |
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| Q |
101 |
cactccataccattatgaagttgctgatttccccttctatcatcttcaaatttttatgatgtgtgaaaaatatcaaacacactcttgtatatattgacca |
200 |
Q |
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| T |
55654399 |
cactccataccattatgaagttgttgatttctccttctatcatcttaaattttttatgatgtgtgaaaaatatcaaacacactctcgtatatattgacca |
55654498 |
T |
|
| Q |
201 |
atttgaatccgctataagattaatttttgagttaacgatcgctaatactatatcttccaaatgtgcgactccatgaattgaacctagattgtttttctaa |
300 |
Q |
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|||| ||||| ||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55654499 |
atttaaatccactataagattaatttttaagttaacgatcg-ttagactatatcttccaaatgtgcgactccatgaattgaacctagattgtttttctaa |
55654597 |
T |
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| Q |
301 |
gtaaagtgatgttgccaactctaccatcatcatattggtgacgtgatctta |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55654598 |
gtaaagtgatgttgccaactctaccatcatcatattggtgacgtgatctta |
55654648 |
T |
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