View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10902_low_1 (Length: 278)
Name: NF10902_low_1
Description: NF10902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10902_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 91 - 268
Target Start/End: Original strand, 10439498 - 10439675
Alignment:
| Q |
91 |
tcatggcgaatcaatctagcaccaaaggttcttcgtcgtcgaatcccgtggaatcgtacattggttgtttcataagcttgatttctaactacgacattcg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10439498 |
tcatggcgaatcaatctagcaccaaaggttcttcgtcgtcgaatcccgtggaatcgtacattggttgtttcataagcttgatttctaactacgacattcg |
10439597 |
T |
|
| Q |
191 |
ttacgagggtgttctttatttccttaatgttcaggattctaccatcggattgaacaatggtatgttaaccgatctctg |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10439598 |
ttacgagggtgttctttatttccttaatgttcaggattctaccatcggattgaacaatggtatgttaaccgatttctg |
10439675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10439451 - 10439507
Alignment:
| Q |
18 |
ccttccatcttcaattcttcatcgctgttattttctcctctactctgtcatcgcgaa |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10439451 |
ccttccatcttcaattcttcatcgctgttattttctcctctactctgtcatggcgaa |
10439507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University