View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10903_high_1 (Length: 505)
Name: NF10903_high_1
Description: NF10903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10903_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 441
Target Start/End: Complemental strand, 13039454 - 13039020
Alignment:
| Q |
6 |
tgagatgaactagattttagagttggaaatacaattcatgtgttttcgaataaaaacattattgtgaatgtccatggcatgtcatcaaccaaaaaacttt |
105 |
Q |
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| T |
13039454 |
tgagatgaactagattttagagttggaaatacaattcacgtgttttgggataaaaacattattgtgaatgtccatggcatgtaatcaaccaaaaaacttt |
13039355 |
T |
|
| Q |
106 |
cggagaaacttgaaaggcaagtatctcatattggtcattgttgaagaagcagtttcgtaacttacgcgtggaatgattctgatacnnnnnnnnnnnccac |
205 |
Q |
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| T |
13039354 |
aagagaaacttgaaaggcaaatatctcatattggtcattgttgaagaagcagtttcgtaacttacgcgtggaatgattctgata-tttttttttttccac |
13039256 |
T |
|
| Q |
206 |
cttgtgtaaccctaattatataaacaaacatatcattcattcattcaaatttatgtatgtgaaactttactacacttaattcattcattcatt---catt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || | | | |||| |
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| T |
13039255 |
cttgtgtaaccctaattatataaacaaacatatcattcattcattcaaatttatgtatgtgaaactttactacacttgaattttttttaaacttgacatt |
13039156 |
T |
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| Q |
303 |
gcagttgtatgaaatactgtaaattgtgcacaagatcgctattgtaaattgttaaggttaatactttttgatcaaattttagtaaggttattaatgataa |
402 |
Q |
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| T |
13039155 |
gcagttgtatgaaatactgtaaattgtgcacaagatcgctattgtaaattg-taaggttaatactttttgatcaaattttagtaaggttattaatgataa |
13039057 |
T |
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| Q |
403 |
tggattgtaactttgacacaatatacatcaatgttttaa |
441 |
Q |
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| T |
13039056 |
tggattgtaactttgacaca--atacatcaatgttttaa |
13039020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 441
Target Start/End: Complemental strand, 13109448 - 13109015
Alignment:
| Q |
6 |
tgagatgaactagattttagagttggaaatacaattcatgtgttttcgaataaaaacattattgtgaatgtccatggcatgtcatcaaccaaaaaacttt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13109448 |
tgagatgaactagattttagagttggaaatacaattcacgtgttttgggataaaaacattattgtgaatgtccatggcatgtaatcaaccaaaaaacttt |
13109349 |
T |
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| Q |
106 |
cggagaaacttgaaaggcaagtatctcatattggtcattgttgaagaagcagtttcgtaacttacgcgtggaatgattctgatacnnnnnnnnnnnccac |
205 |
Q |
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| T |
13109348 |
aagagaaacttgaaaggcaaatatctcatattggtcattgttgaagaagcagtttcgtaacttacgcgtggaatgattctgata--ttttttttttccac |
13109251 |
T |
|
| Q |
206 |
cttgtgtaaccctaattatataaacaaacatatcattcattcattcaaatttatgtatgtgaaactttactacacttaattcattcattcatt---catt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || | | | |||| |
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| T |
13109250 |
cttgtgtaaccctaattatataaacaaacatatcattcattcattcaaatttatgtatgtgaaactttactacacttgaattttttttaaacttgacatt |
13109151 |
T |
|
| Q |
303 |
gcagttgtatgaaatactgtaaattgtgcacaagatcgctattgtaaattgttaaggttaatactttttgatcaaattttagtaaggttattaatgataa |
402 |
Q |
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| T |
13109150 |
gcagttgtatgaaatactgtaaattgtgcacaagatcgctattgtaaattg-taaggttaatactttttgatcaaattttagtaaggttattaatgataa |
13109052 |
T |
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| Q |
403 |
tggattgtaactttgacacaatatacatcaatgttttaa |
441 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
13109051 |
tggattgtaactttgacaca--atacatcaatgttttaa |
13109015 |
T |
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