View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10903_low_2 (Length: 389)

Name: NF10903_low_2
Description: NF10903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10903_low_2
NF10903_low_2
[»] chr7 (7 HSPs)
chr7 (295-380)||(34293383-34293468)
chr7 (295-377)||(32979455-32979537)
chr7 (296-377)||(10365992-10366072)
chr7 (3-41)||(34293719-34293757)
chr7 (1-41)||(36582739-36582779)
chr7 (213-245)||(34293515-34293547)
chr7 (213-243)||(10365893-10365923)
[»] scaffold0005 (1 HSPs)
scaffold0005 (296-377)||(270547-270628)
[»] chr3 (3 HSPs)
chr3 (296-377)||(11387658-11387739)
chr3 (296-377)||(46742734-46742815)
chr3 (213-243)||(11387559-11387589)
[»] chr1 (3 HSPs)
chr1 (296-377)||(47896880-47896961)
chr1 (296-377)||(8039422-8039503)
chr1 (296-377)||(27786548-27786629)
[»] chr8 (2 HSPs)
chr8 (296-377)||(38499409-38499490)
chr8 (296-377)||(10182276-10182356)
[»] chr2 (1 HSPs)
chr2 (296-377)||(1533485-1533566)
[»] scaffold0725 (2 HSPs)
scaffold0725 (295-370)||(1297-1372)
scaffold0725 (1-41)||(961-1001)
[»] scaffold0088 (2 HSPs)
scaffold0088 (295-370)||(27213-27288)
scaffold0088 (1-41)||(26875-26915)
[»] chr6 (3 HSPs)
chr6 (295-375)||(9566998-9567078)
chr6 (296-361)||(11366920-11366985)
chr6 (3-41)||(9566733-9566771)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 34293468 - 34293383
Alignment:
Q  295 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatct 380  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34293468 taagtcagtctcttctctccaccgatccaccaaaacagcattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatct 34293383  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 295 - 377
Target Start/End: Original strand, 32979455 - 32979537
Alignment:
Q  295 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    |||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||| |||||||| ||||||||||||||||    
T  32979455 taagtcagactcttctctccaccgatccaccaaaacagcatcgtcgccaccactgcacaaccaccatgtcatcaccaccttca 32979537  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 10365992 - 10366072
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    ||||||||||| |||||||||||||||||| ||||| |||  ||||||||| ||||||||| || |||||||||||||||||    
T  10365992 aagtcagactcttctctccaccgatccacc-aaacagcatcatcgacaccattgcaaaacctccgcgtcatcaccaccttca 10366072  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 34293757 - 34293719
Alignment:
Q  3 tgtatttgaaaacctcatcaacaacaaaactcctagaag 41  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34293757 tgtatttgaaaacctcatcaacaacaaaactcctagaag 34293719  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36582739 - 36582779
Alignment:
Q  1 cgtgtatttgaaaacctcatcaacaacaaaactcctagaag 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  36582739 cgtgtatttgaaaacctcatcaacaacaaaactcgtagaag 36582779  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 34293547 - 34293515
Alignment:
Q  213 gaaaacagctacgacgttttcgatgctctctct 245  Q
    |||||||||||||||||||||||||||||||||    
T  34293547 gaaaacagctacgacgttttcgatgctctctct 34293515  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 10365893 - 10365923
Alignment:
Q  213 gaaaacagctacgacgttttcgatgctctct 243  Q
    |||||||||||||||||||||||||||||||    
T  10365893 gaaaacagctacgacgttttcgatgctctct 10365923  T

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Target: scaffold0005 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 270547 - 270628
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    ||||||||||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||    
T  270547 aagtcagactcttctctccaccgatccaccaaaacagtatcgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 270628  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 11387658 - 11387739
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||    
T  11387658 aagtcagactcttctctccaccgatccaccaaaacagcatagtcgacaccactgcaaaaccaccacgtcatcatcaccttca 11387739  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 46742815 - 46742734
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    ||||| ||||| |||||||||| ||||||||||||| ||| |||| ||||| || |||| ||||||||||||||||||||||    
T  46742815 aagtcggactcttctctccaccaatccaccaaaacagcatcgtcgccaccattgtaaaatcaccacgtcatcaccaccttca 46742734  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 11387559 - 11387589
Alignment:
Q  213 gaaaacagctacgacgttttcgatgctctct 243  Q
    |||||||||||||||||||||||||||||||    
T  11387559 gaaaacagctacgacgttttcgatgctctct 11387589  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 47896880 - 47896961
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  47896880 aagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactacaaaaccaccacgtcatcaccaccttca 47896961  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 8039422 - 8039503
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    |||||| |||| |||||||| ||||||||||||||| |||  ||||||||| |||||||||||| |||||||||||||||||    
T  8039422 aagtcatactcttctctccatcgatccaccaaaacatcatcttcgacaccattgcaaaaccaccgcgtcatcaccaccttca 8039503  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 27786629 - 27786548
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    ||||| ||||| |||||| || |||||||||||||| ||| |||| |||||||| |||| |||||||| |||||||||||||    
T  27786629 aagtcggactcttctctcaactgatccaccaaaacatcatcgtcgccaccactgtaaaatcaccacgttatcaccaccttca 27786548  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 38499409 - 38499490
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| || ||||||    
T  38499409 aagtcagactcttctctccaccgatccaccaaaacaacatcgtcgacagcactacaaaaccaccacgtcatcgccgccttca 38499490  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 10182276 - 10182356
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    ||||| ||||| |||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||||    
T  10182276 aagtcggactcttctctccaccgatccaccaaaa-agcatcgtcgccaccactgcaaaaccaccacgtcatcaccaccttca 10182356  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 1533485 - 1533566
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttca 377  Q
    ||||| ||||| |||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||    
T  1533485 aagtcggactcttctctccaccgatccaccaaaacagcatcgtcgccaccactgtaaaaccaccacgtcatcaccaccttca 1533566  T

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Target: scaffold0725 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 1297 - 1372
Alignment:
Q  295 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcacc 370  Q
    ||||||||| || |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  1297 taagtcagattcttctctccaccgatccaccaaaacagcatcatcgacaccactgcaaaaccaccacgtcatcacc 1372  T

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Target: scaffold0725; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 961 - 1001
Alignment:
Q  1 cgtgtatttgaaaacctcatcaacaacaaaactcctagaag 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  961 cgtgtatttgaaaacctcatcaacaacaaaactcgtagaag 1001  T

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Target: scaffold0088 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 27213 - 27288
Alignment:
Q  295 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcacc 370  Q
    ||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  27213 taagtcagattcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaatcaccacgtcatcacc 27288  T

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Target: scaffold0088; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26875 - 26915
Alignment:
Q  1 cgtgtatttgaaaacctcatcaacaacaaaactcctagaag 41  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  26875 cgtgtatttgaaaacctcatcaacaacaaaattcgtagaag 26915  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 9566998 - 9567078
Alignment:
Q  295 taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccacctt 375  Q
    ||||| |||||| |||||||| |||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  9566998 taagttagactcttctctccatcgattcaccaaaacagcatcgtcgacaccactgcaaaaccaccacgtcgtcaccacctt 9567078  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 11366920 - 11366985
Alignment:
Q  296 aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccac 361  Q
    ||||||||||  ||||||||| |||||||||||||| ||| || ||||||||||||||||||||||    
T  11366920 aagtcagacttttctctccactgatccaccaaaacagcatcgttgacaccactgcaaaaccaccac 11366985  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 9566733 - 9566771
Alignment:
Q  3 tgtatttgaaaacctcatcaacaacaaaactcctagaag 41  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  9566733 tgtatttgaaaacctcatcaacaacaaaactcgtagaag 9566771  T

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