View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10903_low_3 (Length: 322)

Name: NF10903_low_3
Description: NF10903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10903_low_3
NF10903_low_3
[»] chr7 (6 HSPs)
chr7 (92-304)||(33017598-33017811)
chr7 (32-98)||(28824619-28824685)
chr7 (35-88)||(43213427-43213480)
chr7 (32-99)||(19510245-19510312)
chr7 (31-98)||(26153775-26153842)
chr7 (32-107)||(33684796-33684871)
[»] chr3 (11 HSPs)
chr3 (32-99)||(24551115-24551182)
chr3 (31-102)||(55195462-55195532)
chr3 (32-97)||(39604136-39604201)
chr3 (32-98)||(33007476-33007543)
chr3 (32-98)||(37302963-37303029)
chr3 (32-98)||(26280000-26280065)
chr3 (32-90)||(37215128-37215186)
chr3 (32-97)||(28269922-28269987)
chr3 (32-97)||(32536857-32536921)
chr3 (32-89)||(46473244-46473301)
chr3 (44-89)||(48945975-48946020)
[»] chr6 (7 HSPs)
chr6 (32-99)||(29383673-29383740)
chr6 (32-98)||(1196151-1196217)
chr6 (35-99)||(31480724-31480788)
chr6 (35-99)||(31517068-31517132)
chr6 (44-90)||(29643317-29643363)
chr6 (35-74)||(21857482-21857521)
chr6 (61-98)||(8395470-8395507)
[»] chr2 (12 HSPs)
chr2 (32-90)||(1889263-1889321)
chr2 (32-98)||(18917740-18917806)
chr2 (32-99)||(23045277-23045344)
chr2 (32-99)||(13104595-13104662)
chr2 (32-99)||(32750114-32750181)
chr2 (32-100)||(7086011-7086079)
chr2 (32-95)||(6639364-6639427)
chr2 (32-98)||(19695581-19695646)
chr2 (32-99)||(34249696-34249764)
chr2 (54-102)||(43665760-43665808)
chr2 (32-90)||(23880211-23880269)
chr2 (44-101)||(15901891-15901948)
[»] chr8 (11 HSPs)
chr8 (32-99)||(3989021-3989088)
chr8 (38-99)||(40604591-40604652)
chr8 (45-99)||(37032990-37033044)
chr8 (35-98)||(21418481-21418544)
chr8 (32-99)||(23258148-23258215)
chr8 (32-90)||(22767246-22767304)
chr8 (32-98)||(40102139-40102205)
chr8 (61-102)||(16036712-16036753)
chr8 (32-89)||(28473443-28473500)
chr8 (66-99)||(42996600-42996633)
chr8 (35-71)||(42047454-42047490)
[»] chr5 (6 HSPs)
chr5 (32-100)||(19376019-19376087)
chr5 (32-101)||(27392588-27392657)
chr5 (32-102)||(33909972-33910043)
chr5 (32-90)||(3728901-3728958)
chr5 (32-98)||(15531778-15531846)
chr5 (32-89)||(31329024-31329081)
[»] chr4 (9 HSPs)
chr4 (32-98)||(24337245-24337311)
chr4 (32-98)||(35580226-35580292)
chr4 (32-99)||(51717172-51717239)
chr4 (35-100)||(39684744-39684809)
chr4 (44-99)||(52891739-52891794)
chr4 (44-99)||(37547163-37547218)
chr4 (35-97)||(5123480-5123542)
chr4 (35-100)||(10994040-10994105)
chr4 (31-71)||(34116456-34116496)
[»] scaffold0155 (1 HSPs)
scaffold0155 (44-100)||(3162-3218)
[»] chr1 (6 HSPs)
chr1 (32-100)||(39010930-39010998)
chr1 (32-104)||(47015191-47015263)
chr1 (32-99)||(366773-366840)
chr1 (32-99)||(50659080-50659147)
chr1 (32-89)||(34187380-34187437)
chr1 (45-101)||(31378611-31378667)
[»] scaffold0154 (1 HSPs)
scaffold0154 (32-98)||(9737-9803)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 92 - 304
Target Start/End: Original strand, 33017598 - 33017811
Alignment:
92 actactctattctaaa-tagtacattgaaggtagaactttatatgaaattttttatgcaaatgcaatgtcccacattttggagagggtcaggagaagaga 190  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33017598 actactctattctaaaatagtacattgaaggtagaactttatatgaaattttttatgcaaatgcaatgtcccacattttggagagggtcaggagaagaga 33017697  T
191 gagatgcaagaagaccatgctaactctttgtcttgtgagtgaaaaaagaagttactgtaactgcttaccaacttgagtcttgagatagaaaattgttgta 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
33017698 gagatgcaagaagaccatgctaactctttgtcttgtgagtgaaaaaagaagttactgtaactacttaccaacttgagtcttgagatagaaaattgttgta 33017797  T
291 tacacatccttgat 304  Q
    ||||||||||||||    
33017798 tacacatccttgat 33017811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 28824619 - 28824685
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    |||||||||||  ||| | ||||||||| |||| |||||||||||| |||||||||||| |||||||    
28824619 atgaaaagagaggaaacaaaagttgtcacataagttgtctcatttggttgttcaaataacactactc 28824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 43213427 - 43213480
Alignment:
35 aaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaat 88  Q
    |||| ||| |||||||||||||||||||| ||||||||||||| ||||| ||||    
43213427 aaaaaagagaaaaaagaagttgtcatatacattgtctcatttggttgtttaaat 43213480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 19510312 - 19510245
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| |||||| ||||||| | | || |||||| || ||||||||||||||| ||||||||    
19510312 atgaaaagagagaaaaaataagttgttacaaaagttgtcttatatgattgttcaaataacactactct 19510245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 26153775 - 26153842
Alignment:
31 gatgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    |||||||||||| |||  ||||||||||| |||| ||||||||| || |||||||||||  |||||||    
26153775 gatgaaaagagagaaatgagaagttgtcacataagttgtctcatatgtttgttcaaatatcactactc 26153842  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 33684796 - 33684871
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactctattctaaa 107  Q
    ||||||||| | |||||||||||||||| | || |||| |||| |  |||||||||||| ||||||||||| ||||    
33684796 atgaaaagatagaaaaaagaagttgtcacaaaagttgtttcatatagttgttcaaataacactactctattttaaa 33684871  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 24551182 - 24551115
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
24551182 atgaaaagagagaaaaaagaagttgtcacataaattgtctcatttgattgttcaaataacactactct 24551115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 55195462 - 55195532
Alignment:
31 gatgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactctatt 102  Q
    ||||||||||||  ||||| || |||||| |||||||||||||||||||||||||||||| |||||| ||||    
55195462 gatgaaaagagaggaaaaaaaa-ttgtcacataaattgtctcatttgattgttcaaataacactactttatt 55195532  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 39604201 - 39604136
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactact 97  Q
    ||||||||||| |||||||||||||||| |||| || ||||||||  |||||||||||| ||||||    
39604201 atgaaaagagagaaaaaagaagttgtcaaataagttatctcatttagttgttcaaataacactact 39604136  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 33007476 - 33007543
Alignment:
32 atgaaaagagacaaaa-aagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    ||||||||||| |||| |||||||||||| | |||||||||||| || |||||||||||| |||||||    
33007476 atgaaaagagagaaaaaaagaagttgtcacaaaaattgtctcatatggttgttcaaataacactactc 33007543  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 37303029 - 37302963
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    ||||||||||| ||||||||| |||||| | || ||||||||| || |||||||||||| |||||||    
37303029 atgaaaagagagaaaaaagaaattgtcacaaaagttgtctcatatgcttgttcaaataacactactc 37302963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 26280000 - 26280065
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    |||||||||||  ||||| || |||||| |||| || |||||||||||||||||||||| |||||||    
26280000 atgaaaagagaggaaaaaaaa-ttgtcacataagttatctcatttgattgttcaaataacactactc 26280065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 37215186 - 37215128
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataa 90  Q
    ||||||||||| |||||| ||||||||| | || ||||||||| || ||||||||||||    
37215186 atgaaaagagagaaaaaataagttgtcacaaaagttgtctcatatggttgttcaaataa 37215128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 28269922 - 28269987
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactact 97  Q
    ||||||||| | |||||||||||||||  | || ||||||||| || |||||||||||| ||||||    
28269922 atgaaaagatagaaaaaagaagttgtcgcaaaagttgtctcatatggttgttcaaataacactact 28269987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 32536857 - 32536921
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactact 97  Q
    ||||||||||| | |||| ||||||||| |||| |||| |||||| ||||||||||||| ||||||    
32536857 atgaaaagagagagaaaa-aagttgtcacataagttgtatcatttaattgttcaaataacactact 32536921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 46473244 - 46473301
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaata 89  Q
    ||||||||||| |||||||||||||||||| || |||| |||  || |||||||||||    
46473244 atgaaaagagagaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaata 46473301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 48945975 - 48946020
Alignment:
44 aaaaaagaagttgtcatataaattgtctcatttgattgttcaaata 89  Q
    |||||||||||| ||||||||||||| |||  ||||||||||||||    
48945975 aaaaaagaagttatcatataaattgtttcaaatgattgttcaaata 48946020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 29383673 - 29383740
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||    
29383673 atgaaaagagagaaaaaagaagttgtcacataaattgtctcatttgcttgttcaaataacactactct 29383740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 1196151 - 1196217
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    ||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||    
1196151 atgaaaagagagaaaaaagaagttatcacataagttgtctcatttgattgttcaaataacactactc 1196217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 31480788 - 31480724
Alignment:
35 aaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    |||||||| |||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||    
31480788 aaaagagagaaaaaagaagttgtcacataaattgtctcatttagttgttcaaataacactactct 31480724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 31517132 - 31517068
Alignment:
35 aaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    |||||||| |||||||||||||||| |||| |||||||||||  |||||||||||| ||||||||    
31517132 aaaagagagaaaaaagaagttgtcacataagttgtctcatttagttgttcaaataacactactct 31517068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 29643363 - 29643317
Alignment:
44 aaaaaagaagttgtcatataaattgtctcatttgattgttcaaataa 90  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||    
29643363 aaaaaagaaattgtcatataaattgtctcatttaattgttcaaataa 29643317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 21857521 - 21857482
Alignment:
35 aaaagagacaaaaaagaagttgtcatataaattgtctcat 74  Q
    |||||||| |||||||||||||||||| ||||||||||||    
21857521 aaaagagagaaaaaagaagttgtcataaaaattgtctcat 21857482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 8395470 - 8395507
Alignment:
61 ataaattgtctcatttgattgttcaaataatactactc 98  Q
    |||||||||||||| ||||||||||||||| |||||||    
8395470 ataaattgtctcatatgattgttcaaataacactactc 8395507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 1889263 - 1889321
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataa 90  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
1889263 atgaaaagagagaaaaaagaagttgtcacataaattgtctcatttgattgttcaaataa 1889321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 18917740 - 18917806
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||| |||||||    
18917740 atgaaaagagagaaaaaagaagttgtcacataaattgtctcattttgttgttcaaataacactactc 18917806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 23045277 - 23045344
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||| ||| |||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||    
23045277 atgaaaatagagaaaaaagaagttgtcacataagttgtctcatttggttgttcaaataacactactct 23045344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 13104595 - 13104662
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| |||||| ||||||||| | |||||||||||| || |||||||||||| ||||||||    
13104595 atgaaaagagagaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactct 13104662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 32750114 - 32750181
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| |||||| ||||||||| | |||||||||||| || |||||||||||| ||||||||    
32750114 atgaaaagagagaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactct 32750181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 7086079 - 7086011
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactcta 100  Q
    ||||||||||| | |||| ||||||||| | |||||||||||| || |||||||||||| |||||||||    
7086079 atgaaaagagagagaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactcta 7086011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 6639427 - 6639364
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatacta 95  Q
    ||||||||||| | |||||||||||||| |||| || ||||||||| |||||||||||| ||||    
6639427 atgaaaagagagagaaaagaagttgtcacataagttatctcatttggttgttcaaataacacta 6639364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 19695646 - 19695581
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    |||||||||||  ||||| ||||||||| |||| |||||||||||| |||||||||||| |||||||    
19695646 atgaaaagagaggaaaaa-aagttgtcacataagttgtctcatttggttgttcaaataacactactc 19695581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 34249696 - 34249764
Alignment:
32 atgaaaagagacaaaaaag-aagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| ||||||  ||||||||| | |||||||||||| || |||||||||||| ||||||||    
34249696 atgaaaagagagaaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactct 34249764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 43665760 - 43665808
Alignment:
54 ttgtcatataaattgtctcatttgattgttcaaataatactactctatt 102  Q
    |||||| |||||||||||| |||| |||||||||||| |||||||||||    
43665760 ttgtcacataaattgtctcgtttggttgttcaaataacactactctatt 43665808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 23880211 - 23880269
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataa 90  Q
    ||||||||||| |||||| || |||||||| || ||||||||| || ||||||||||||    
23880211 atgaaaagagagaaaaaataaattgtcataaaagttgtctcatatggttgttcaaataa 23880269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 15901948 - 15901891
Alignment:
44 aaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactctat 101  Q
    |||||| ||||||||| | || || |||||| ||||||||||||||| ||||||||||    
15901948 aaaaaataagttgtcacaaaagttatctcatatgattgttcaaataacactactctat 15901891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 3989021 - 3989088
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||    
3989021 atgaaaagagagaaaaaagaagttgtcacataagttgtctcatttggttgttcaaataacactactct 3989088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 40604652 - 40604591
Alignment:
38 agagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||| ||||||||| || ||| ||||||||||||||||| |||||||||||| ||||||||    
40604652 agagagaaaaaagaaattatcacataaattgtctcatttggttgttcaaataacactactct 40604591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 37033044 - 37032990
Alignment:
45 aaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||| ||||| ||| |||| ||||||||||||||||||||||||| ||||||||    
37033044 aaaaaaaagttatcacataagttgtctcatttgattgttcaaataacactactct 37032990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 21418544 - 21418481
Alignment:
35 aaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    |||||| | |||||| ||||||||| |||| |||||||||||  |||||||||||| |||||||    
21418544 aaaagatagaaaaaataagttgtcacataagttgtctcatttagttgttcaaataacactactc 21418481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 23258148 - 23258215
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| |||||||||||||||| | ||||||| |||  || |||||||||||  ||||||||    
23258148 atgaaaagagagaaaaaagaagttgtcacaaaaattgtttcaaatggttgttcaaatatcactactct 23258215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 22767246 - 22767304
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataa 90  Q
    ||||||||||| |||||||||||||||| | || |||||||||  | ||||||||||||    
22767246 atgaaaagagagaaaaaagaagttgtcacaaaagttgtctcatacggttgttcaaataa 22767304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 40102139 - 40102205
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    ||||||||||| | |||| ||||||||| | || ||||||||| || |||||||||||| |||||||    
40102139 atgaaaagagagagaaaataagttgtcacaaaagttgtctcatatggttgttcaaataacactactc 40102205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 16036712 - 16036753
Alignment:
61 ataaattgtctcatttgattgttcaaataatactactctatt 102  Q
    ||||||||||||||||| |||||||||||| || ||||||||    
16036712 ataaattgtctcatttggttgttcaaataacacgactctatt 16036753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 28473500 - 28473443
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaata 89  Q
    ||||||||||| |||||||||||||| | | ||||||||||| || | ||||||||||    
28473500 atgaaaagagagaaaaaagaagttgttaaaaaaattgtctcaattaaatgttcaaata 28473443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 42996600 - 42996633
Alignment:
66 ttgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||||||||||||||||| ||||||||    
42996600 ttgtctcatttgattgttcaaataacactactct 42996633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 42047454 - 42047490
Alignment:
35 aaaagagacaaaaaagaagttgtcatataaattgtct 71  Q
    |||||||| |||||||||||||||| |||||||||||    
42047454 aaaagagagaaaaaagaagttgtcacataaattgtct 42047490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 19376087 - 19376019
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactcta 100  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||  |||||||||||| |||||||||    
19376087 atgaaaagagagaaaaaagaagttgtcacataagttgtctcatttagttgttcaaataacactactcta 19376019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 27392657 - 27392588
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactctat 101  Q
    ||||||||||| |||||| ||||||||| | || ||||||||| || |||||||||||| ||||||||||    
27392657 atgaaaagagaaaaaaaataagttgtcacaaaagttgtctcatatggttgttcaaataacactactctat 27392588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 33910043 - 33909972
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttga-ttgttcaaataatactactctatt 102  Q
    ||||||||||| | |||||||||||||| ||||||||||| || | | |||||||||||  |||||||||||    
33910043 atgaaaagagagagaaaagaagttgtcacataaattgtctaatataagttgttcaaatatcactactctatt 33909972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 3728958 - 3728901
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataa 90  Q
    ||||||||||| ||||| |||||||| ||| |||||||||||  |||||||||||||||    
3728958 atgaaaagagagaaaaa-gaagttgttataaaaattgtctcaaatgattgttcaaataa 3728901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 15531846 - 15531778
Alignment:
32 atgaaaagagacaaaaaagaagttgtcat--ataaattgtctcatttgattgttcaaataatactactc 98  Q
    ||||||||||| ||||||||| |||||||  | |||||||||||  ||||||||||||||  |||||||    
15531846 atgaaaagagagaaaaaagaaattgtcataaaaaaattgtctcaactgattgttcaaatatcactactc 15531778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 31329081 - 31329024
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaata 89  Q
    ||||||||||| || ||||||||||||| |||||||||| ||  || |||||||||||    
31329081 atgaaaagagaaaataaagaagttgtcacataaattgtcccacatggttgttcaaata 31329024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 24337311 - 24337245
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    ||||||||||| |||||||||| ||||| ||||||| ||||||||| |||||||||||| |||||||    
24337311 atgaaaagagagaaaaaagaagctgtcacataaattatctcatttggttgttcaaataacactactc 24337245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 35580226 - 35580292
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    |||||||||||  ||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||    
35580226 atgaaaagagaggaaaaaaaagttgtcacataagttgtctcatttgattgttcaaataacactactc 35580292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 51717239 - 51717172
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||  ||||||||    
51717239 atgaaaagagagaaaaaagaaattgtcacataagttgtctcatatgattgttcaaatatcactactct 51717172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 39684744 - 39684809
Alignment:
35 aaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactcta 100  Q
    ||||||||| ||| | || |||||| |||| |||||||||||| ||||||||||||||||||||||    
39684744 aaaagagacgaaataaaaattgtcacataagttgtctcatttggttgttcaaataatactactcta 39684809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 52891794 - 52891739
Alignment:
44 aaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    |||||| ||||||||| |||| || |||||||||||||||||||||||| ||||||    
52891794 aaaaaaaaagttgtcacataagttatctcatttgattgttcaaataatattactct 52891739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 37547163 - 37547218
Alignment:
44 aaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    |||||||||||| ||| |||||||||||||  | |||||||||||| |||||||||    
37547163 aaaaaagaagttatcacataaattgtctcagataattgttcaaatattactactct 37547218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 5123542 - 5123480
Alignment:
35 aaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactact 97  Q
    |||||||| |||||| ||||||||| | || ||||||||| || |||||||||||| ||||||    
5123542 aaaagagagaaaaaataagttgtcacaaaagttgtctcatatggttgttcaaataacactact 5123480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 10994105 - 10994040
Alignment:
35 aaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactcta 100  Q
    |||||||| | |||||||||||||  ||||||||||| |  ||||||||||||||  |||||||||    
10994105 aaaagagagagaaaagaagttgtcgcataaattgtctaaaatgattgttcaaatatcactactcta 10994040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 34116496 - 34116456
Alignment:
31 gatgaaaagagacaaaaaagaagttgtcatataaattgtct 71  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
34116496 gatgaaaagagagaaaaaaaaagttgtcacataaattgtct 34116456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 3218 - 3162
Alignment:
44 aaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactcta 100  Q
    |||||| || |||||| ||||||| ||||||||||||||| ||||||||||||||||    
3218 aaaaaaaaaattgtcacataaattatctcatttgattgtttaaataatactactcta 3162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 39010930 - 39010998
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactcta 100  Q
    ||||||||||| |||||| ||||||||| | || ||||||||| || |||||||||||| |||||||||    
39010930 atgaaaagagagaaaaaataagttgtcacaaaagttgtctcatatggttgttcaaataacactactcta 39010998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 47015263 - 47015191
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactctattct 104  Q
    |||||||||||  ||||| || ||||||||||| |||||||||||| |||||||||||| ||| |||| ||||    
47015263 atgaaaagagaggaaaaaaaaattgtcatataagttgtctcatttggttgttcaaataacactgctcttttct 47015191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 366773 - 366840
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    |||||||||||  ||||| ||||||||| |||| |||||||||||| |||||||||||| | ||||||    
366773 atgaaaagagaggaaaaaaaagttgtcacataagttgtctcatttggttgttcaaataacattactct 366840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 50659147 - 50659080
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactct 99  Q
    ||||||||||| | |||||||||||||| |||| |||| |||| || |||||||||||| ||||||||    
50659147 atgaaaagagagagaaaagaagttgtcacataagttgtttcatatggttgttcaaataacactactct 50659080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 34187380 - 34187437
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaata 89  Q
    ||||||||||| |||| ||||||||||| |||||||||||||  || |||||||||||    
34187380 atgaaaagagagaaaagagaagttgtcacataaattgtctcacatggttgttcaaata 34187437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 31378611 - 31378667
Alignment:
45 aaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactctat 101  Q
    ||||| ||||||| | |||| |||||||||||  |||||||||||| ||||||||||    
31378611 aaaaaaaagttgttacataagttgtctcatttagttgttcaaataacactactctat 31378667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 9803 - 9737
Alignment:
32 atgaaaagagacaaaaaagaagttgtcatataaattgtctcatttgattgttcaaataatactactc 98  Q
    ||||||||||| |||||| ||||||||| | || ||| ||||| ||||||||||||||| |||||||    
9803 atgaaaagagaaaaaaaataagttgtcacaaaagttgcctcatatgattgttcaaataacactactc 9737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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