View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10903_low_9 (Length: 206)
Name: NF10903_low_9
Description: NF10903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10903_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 19962380 - 19962499
Alignment:
| Q |
76 |
tggtttcttgaacccttcttcatcttcctttcctcaacttcctcccctaccccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttg |
175 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
19962380 |
tggtttcttgaacccttcttcatcatcctttcctcaccttcttcccctacccc-cgtatcaccaccatcatccatggcggcaccaactttggtcgttttg |
19962478 |
T |
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| Q |
176 |
tctccgctgcaaccgtctctg |
196 |
Q |
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|||| ||||||||||||||| |
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| T |
19962479 |
tctctactgcaaccgtctctg |
19962499 |
T |
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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 1971415 - 1971487
Alignment:
| Q |
124 |
accccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg |
196 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1971415 |
accctccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg |
1971487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37362446 - 37362401
Alignment:
| Q |
1 |
cccatgcttccctcttcttctctttctgtcacattttgattaaaca |
46 |
Q |
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| T |
37362446 |
cccatgcttccctcttcttctccctctgtcacattttgattaaaca |
37362401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 1971360 - 1971400
Alignment:
| Q |
89 |
ccttcttcatcttcctttcctcaacttcctcccctaccccc |
129 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| |
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| T |
1971360 |
ccttcttcatcttcctttcctcaccttcttcccctaccccc |
1971400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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