View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10904_high_1 (Length: 506)
Name: NF10904_high_1
Description: NF10904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10904_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 38 - 486
Target Start/End: Complemental strand, 24777451 - 24777001
Alignment:
| Q |
38 |
gcttttacgtataaatctctcactgaaaccctaacc--gcgaaaacgttacatagtcgtcctggctttgtttagggttatatccacagcaaagcttcacc |
135 |
Q |
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| T |
24777451 |
gcttttaggtagaaatctctcagtgaaaccctaaccccgcgaaaacgttacatagtcgtcctggctttgtttagggttgtatccacagcaaagcttcacc |
24777352 |
T |
|
| Q |
136 |
cttacggcagtctcctccactccgtattcgacattatcatgtccggggccaagaaaaaccaacctcctctcaagaaaaccaaaactcatcactttcaatc |
235 |
Q |
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| T |
24777351 |
cctacggcagcctcctccactccgtattcgacgttatcatgtccggcgccaagaaaaaccaacctcctctcaagaaaaccaaaactcatcaccttcaatc |
24777252 |
T |
|
| Q |
236 |
cactccctccaaaagcatacgtacattctttcaaccactcaacaaccctattcctcccaaaaaccctgatactgaatctcctatcaagcttcctcaccaa |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24777251 |
cactccctccaaaagcatacgtacattctttcaaccactcaacagccctattcctcccaaaaaccctgatactgaatctcctatcaagcttcctcaccaa |
24777152 |
T |
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| Q |
336 |
acatcaacttcttcgacttcttctccatcttcttcgtcctcttccaccaatgttgttgaaatgaagaaacggatttcacttttgaagaagacaccgtcgg |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24777151 |
acatcaacttcttcgacttcttctccatcttcttcgtcctcttccaccaatgttgttgaagtgaagaaacggatttcacttttgaagaagacaccgtcgg |
24777052 |
T |
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| Q |
436 |
agtttgatcctagttcaattgcatggtggaagaagggtgatccggtgccgt |
486 |
Q |
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||||||||| ||| || |||||||||||||||||||||| |||||||||| |
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| T |
24777051 |
agtttgatcatagctcggttgcatggtggaagaagggtgaaccggtgccgt |
24777001 |
T |
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