View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10904_high_3 (Length: 427)
Name: NF10904_high_3
Description: NF10904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10904_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 28161794 - 28161393
Alignment:
| Q |
9 |
gagaagaacaccaaagctgtatacatcggcaggttgagtttgtggccgttgaaaactgcggcactcgggtgctctatagaaaaaagaagtggcacttggt |
108 |
Q |
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| T |
28161794 |
gagaaggacaccaaagctgtatacatcggcaggttgagtttgtggccgttgaaaactgcggcactcgggtgctctatagaaaaaagaagtggcacttggt |
28161695 |
T |
|
| Q |
109 |
tcctccattgtgtcgggattaaggaacacagtgagaccataatcagtgagacaggactcaaagtcggcaccaagtaacacattggaagatttcagatttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28161694 |
tcctccattgtgtcgggattaaggaacacagtgagaccataatcagtgagacaggactcaaagtcggcaccaagtaacacattggaagatttcagatttc |
28161595 |
T |
|
| Q |
209 |
cgtgagccatgccggggttttggtggatatagagaaggcctgttgctagatcttctgcaattttaagacatgatgtccagtgaagaggctttcctccgct |
308 |
Q |
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| T |
28161594 |
catgagccatgccggggttttggtggatatagagaaggcctgttgctagatcttctgcaattttaagacatgatgtccagtgaagaggctttcctccgct |
28161495 |
T |
|
| Q |
309 |
agatgttttggttcctgcatattatagtcattaattttgtcaaagcaatgtcaaaatgcagacatttttcaaattactttcttagcaaaagatattgttg |
408 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28161494 |
agatgttttggttcctgc--attatagtcattaattttgtcaaagcaatgtcaaaatgcagacatttttcaaattactttctcagcaaaagatattgttg |
28161397 |
T |
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| Q |
409 |
attg |
412 |
Q |
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|||| |
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| T |
28161396 |
attg |
28161393 |
T |
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