View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10904_high_5 (Length: 317)
Name: NF10904_high_5
Description: NF10904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10904_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 5686823 - 5686534
Alignment:
| Q |
17 |
acatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatggatagttgagatcaaatggttgaggtagtgggtttggac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5686823 |
acatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatggatagttgagatcaaatggttgaggtagtgggtttggac |
5686724 |
T |
|
| Q |
117 |
aattatatgtaaggtttatgtgttgtgttaaattaagattgcaaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcctggatctgatgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5686723 |
aattatatgtaaggtttatgtgttgtgttaaattaagattacaaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcctggatctgatgc |
5686624 |
T |
|
| Q |
217 |
tcttttagggtagaagtggcctgaacccattgcaaaaggtgttgtagggtttcctgtttcatcagtcattggatttcctgtgttgtctgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5686623 |
tcttttagggtagaagtggcctgaacccattgcaaaaggtgttgtagggtttcctgtttcatcagtcattggatttcctgtgttgtctgt |
5686534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 5699028 - 5698739
Alignment:
| Q |
17 |
acatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatggatagttgagatcaaatggttgaggtagtgggtttggac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5699028 |
acatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatggatagttgagatcaaatggttgaggtagtgggtttggac |
5698929 |
T |
|
| Q |
117 |
aattatatgtaaggtttatgtgttgtgttaaattaagattgcaaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcctggatctgatgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5698928 |
aattatatgtaaggtttatgtgttgtgttaaattaagattacaaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcctggatctgatgc |
5698829 |
T |
|
| Q |
217 |
tcttttagggtagaagtggcctgaacccattgcaaaaggtgttgtagggtttcctgtttcatcagtcattggatttcctgtgttgtctgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5698828 |
tcttttagggtagaagtggcctgaacccattgcaaaaggtgttgcaggatttcctgtttcatctgtaattggatttcctgtgttgtctgt |
5698739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University