View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10904_low_3 (Length: 434)
Name: NF10904_low_3
Description: NF10904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10904_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 31679963 - 31679533
Alignment:
| Q |
17 |
actttagatcaccgaaggccctttcgcttgagaaccatagatagtannnnnnnnnnnnnnaggtaaaactcactcattcaaccattaagcacaacattaa |
116 |
Q |
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| T |
31679963 |
actttagatcaccgaaggccctttcgcctcagaaccatagatagtattttttttttttt-aggcaaacctcactcattcaaccattaagcacaacattaa |
31679865 |
T |
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| Q |
117 |
caatcaattggtcacttt-aaaaattacttaattcaaagctcatgtctacaactatcggaatgactaattcgaagagcaatatttttattggtttcaagt |
215 |
Q |
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||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31679864 |
caaccgattggtcactttcaaaaattacttaattcaaagctcatgtctacaactatcggaatgactaatttgaagagcaatatttttattggtttcaagt |
31679765 |
T |
|
| Q |
216 |
gtgagtggttaatcatttatgaatgtgtaaaat-----atatatacaaa--agatgactcgtatacttaacatcttaagatttttggctaagatgactag |
308 |
Q |
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|||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
31679764 |
gtgaatgattaatcatttatgaatgtgtaaaatgttgaatatatacaaattagatgactcgtatacttaacatcttaaggtttttggctaagatgattag |
31679665 |
T |
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| Q |
309 |
gcgcttccaaactctccaacaaaccccgcattcaatcacatgacaa-------------acaaaagaaaaatgcaccgtaacccaagttatcacgaaaac |
395 |
Q |
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| T |
31679664 |
acacttccaaactctccaactaaccccgcattcaatcacatgacaaacaagagaaaaatacaagagaaaaatgcaccgtaacccaagttatcacgaaaac |
31679565 |
T |
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| Q |
396 |
aatactgacttcaaagaccaaaacagcctttg |
427 |
Q |
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||||| | || ||||||||||||||||||||| |
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| T |
31679564 |
aataccgtctccaaagaccaaaacagcctttg |
31679533 |
T |
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