View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10904_low_5 (Length: 401)
Name: NF10904_low_5
Description: NF10904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10904_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 26309722 - 26309880
Alignment:
| Q |
18 |
gaaatgaaataaattttattcaattggcatcatagcttaaattatgaaactcatattgcaaagtcatgttacttcaataacaagnnnnnnntaagataga |
117 |
Q |
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| T |
26309722 |
gaaatgaaataaattttattcaattggtatcatagcttaaattatgaaactcatattgcaaagtcatgttccttcaataacaagaaaaaaataagataga |
26309821 |
T |
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| Q |
118 |
gttcatcttacaatgaaacaccatattatacttatgcaaaaatatagctatactatata |
176 |
Q |
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| T |
26309822 |
gttcatcttacaatgaaacaccatattatacttatgcaaaaatatagctatactatata |
26309880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 220 - 385
Target Start/End: Original strand, 26309859 - 26310025
Alignment:
| Q |
220 |
aaaaatatagctatactatatacgctatcatgatttgcaattgcattaccggtgaatcagaggagactgaaacagccacattctccgc-------gacga |
312 |
Q |
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| T |
26309859 |
aaaaatatagctatactatatacgctatcatgatttgca------ttaccggtgaatcagaggaggctgaaacaacgacattctccgccgtccacgacga |
26309952 |
T |
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| Q |
313 |
cataatccaagctcacatactcacacgccttgacggggccgctctcgcttccgccgcaagcacctgctcccaa |
385 |
Q |
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| T |
26309953 |
cataatccaagctcacatactcacacgccttgacggggccgctctcgcttccgccgcaagcacctgctcccaa |
26310025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 25782801 - 25782880
Alignment:
| Q |
310 |
cgacataatccaagctcacatactcacacgccttgacggggccgctctcgcttccgccgcaagcacctgctcccaattca |
389 |
Q |
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| T |
25782801 |
cgacataatccaaacacacatactcacccgtctcgacggtcctgctcttgcttccgccgcaagcacctgctcccaattca |
25782880 |
T |
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