View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10904_low_6 (Length: 344)
Name: NF10904_low_6
Description: NF10904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10904_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 38856830 - 38857136
Alignment:
| Q |
18 |
agaaggtaccacaaaccaatgatcataacaaagtaagtagttatgcttttttactaaatttttgggcaaggaactattatttgcactaaatacatatata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38856830 |
agaaggtaccacaaaccaatgatcataacaaagtaagtagtaatgcttttttactaaatttttgggcaaggaactattatttgcactaaatacatatata |
38856929 |
T |
|
| Q |
118 |
caacaccaatat----agcatatagaaacactgatttctctacgtaagagtctcggttagaaaaatacaaagtatggatcaaaaatgcatttcaagaaac |
213 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| || ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38856930 |
caacaccaatatatatagcatatagaaacactggtttctttatgtaagggtctcggttaaaaaaataccaagtatggatcaaaaatgcatttcaagaaac |
38857029 |
T |
|
| Q |
214 |
ttgttattccctgtgttattgaacaaagaaataaatctttatcaatcctttaaaaacctatatatagactttcagataaataacaatccatgatattacc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38857030 |
ttgttattccctgtgttattgaacaaagaaataaatctttatcaatcctttaaaaa-------------attcagataaataacaatccatgatattacc |
38857116 |
T |
|
| Q |
314 |
tatactgtcaacatggttca |
333 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
38857117 |
tatattgtcaacatggttca |
38857136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 37690102 - 37690387
Alignment:
| Q |
18 |
agaaggtaccacaaaccaatgatcataacaaagtaagtagttatgcttttttactaaatttttgggcaaggaactattatttgcactaaatacatatata |
117 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37690102 |
agaaggtaccacaaaccaaagatcataataaagtaagaagtgatgcttttttactaaatttttgggtaaggaactattatttgcactaaatacatatatg |
37690201 |
T |
|
| Q |
118 |
caacaccaatatagcatatagaaacactgatttctctacgtaagagtctcggttagaaaaatacaaagtatggatcaaaaatgcatttcaagaaacttgt |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| | |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37690202 |
caacacaaatatagcatatagaaacactggtttctccatgtaagaaattcgattagaaaaatacaaagtatggatc-aaaatgcatttcaagaaacttgt |
37690300 |
T |
|
| Q |
218 |
tattccctgtgttattgaacaaagaaataaatctttatcaatcctttaaaaacctatatatagactttcagataaataacaatccat |
304 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||| | || ||| |||||||||||||||||||||||| |
|
|
| T |
37690301 |
tattccctgtgttattgaacaaaataataaatctttatcaatccattaaaaacttgtacatacactttcagataaataacaatccat |
37690387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University