View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_high_11 (Length: 285)
Name: NF10905_high_11
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 28537255 - 28536984
Alignment:
| Q |
1 |
agcaaatcttgtttgatgagagttttatttactttcggttgttttaaatttttgttatggttggtatatgaatttaaggcaaatgagatttgcaatatgt |
100 |
Q |
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| T |
28537255 |
agcaaatcttatttgatgagagttttatttactttcggttgttttaaatttttgttatggttggtatatgaatttaaggcaaatgagatttgcaatatgt |
28537156 |
T |
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| Q |
101 |
ttagggaaggatttatgtctttgatcaactatttctttaaaactattctctgaatactcttggaacttatctgttgannnnnnnnnnnnnaccttagtta |
200 |
Q |
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| T |
28537155 |
ttagggaaggatttatgtctttgatcaactatttctttaaaactgttctctgaatactcttggaacttatctgttgatttttctttttttaccttagtta |
28537056 |
T |
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| Q |
201 |
gttttatgttgttatgttagatgaagttatggaaaatacgaatgcaatatgtttaaggaagcatttatgtct |
272 |
Q |
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| T |
28537055 |
gttttatgttgttatgttagatgaagttatggaaaatacaaatgcaatatgttcaaggaagcatttatgtct |
28536984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 83 - 272
Target Start/End: Complemental strand, 35687074 - 35686889
Alignment:
| Q |
83 |
atgagatttgcaatatgtttagggaaggatttatgtctttgatcaactatttctttaaaactattctctgaatactcttggaacttatctgttgannnnn |
182 |
Q |
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| T |
35687074 |
atgagatttgcaatatgtttagggaagggtttatgtctttgattaactatttctttaaaactgttctctgaatactcttggaacttatctgttgattttt |
35686975 |
T |
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| Q |
183 |
nnnnnnnnaccttagttagttttatgttgttatgttagatgaagttatggaaaatacgaatgcaatatgtttaaggaagcatttatgtct |
272 |
Q |
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| T |
35686974 |
ctttttttaccttagttagtttt---gtgttatgttagatg-agttatggaaaatacaaatgcaatacgtttaaggaagcatttatgtct |
35686889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 7723507 - 7723375
Alignment:
| Q |
12 |
tttgatgagagttttatttactttcggttgttttaaatttttgttatggttggtatatgaatttaaggcaaatgagatttgcaatatgtttagggaagga |
111 |
Q |
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| T |
7723507 |
tttgatgaaagttttatttactttcgtttgttttaattttttgttatggttggttgatgaatttaaggcaaatgagatttgcaatatgtttagggaggga |
7723408 |
T |
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| Q |
112 |
tttatgtctttgatcaactatttctttaaaact |
144 |
Q |
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| T |
7723407 |
tttatgtctttgataaactgtttctttaaaact |
7723375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 7723164 - 7723083
Alignment:
| Q |
191 |
accttagttagttttatgttgttatgttagatgaagttatggaaaatacgaatgcaatatgtttaaggaagcatttatgtct |
272 |
Q |
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| T |
7723164 |
accttagttcgttgtatgttgttatgttagatgaagtgatggaaaatatgaatgcaatatgtttaaggaaacatttatgtct |
7723083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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