View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_high_18 (Length: 226)
Name: NF10905_high_18
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 42620227 - 42620450
Alignment:
| Q |
1 |
gaaggttttcataaaatttgattcatttgaaagcatcataattatgtggtgtttgataatgatcgttacttaacccgtacacatttggatatgctaaaat |
100 |
Q |
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| T |
42620227 |
gaaggttttcataaaatttgattcatttgaaagcatcataattatgtggtgtttgataatgatcgttacttaactcgtacacatttggatatgctaaaat |
42620326 |
T |
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| Q |
101 |
gtaaggtttgatcttggatcaagtctaaagctaaaggctttctatcactc--atatatttagagtggttgtatatgtaatttgcagaaattgacatacat |
198 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42620327 |
gtaaggtttgatattggatcaagtctaaagctaaaggctatctatcactcagatatatttagagaggttgtatatgtaatttgcagaaattgacatac-- |
42620424 |
T |
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| Q |
199 |
atatataatatgctaactttatactgtc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42620425 |
--atataatatgctaactttatactgtc |
42620450 |
T |
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