View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_high_2 (Length: 434)
Name: NF10905_high_2
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 8570110 - 8569699
Alignment:
| Q |
1 |
tatattccatttataatcttcccaaattttattattatttgttactaccacacaatacagagtaaaagtaatgagaaatttgaccttggaagagcactct |
100 |
Q |
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| T |
8570110 |
tatattccatttataatcttcccaaattttattattatttgttaccaccacacaatacagagtaaaagtaatgagaaatttgaccttggaagagcactct |
8570011 |
T |
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| Q |
101 |
atgttttgactgtctcttttctgattaaccgctctcaaagtacta-gaatatttggctatggaaatgcagaactttaatttcagtttgattgcttttgtt |
199 |
Q |
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| T |
8570010 |
atgttttgactgtctcttttctgattaactgctctcaaagtactaagaatatttggctatggaaatgcagaactttaatttcagtttgattgcttttgtt |
8569911 |
T |
|
| Q |
200 |
aacaaatgtcagcaacacactcctttggtgggttcatgtgaatttttaaccaatcaaaaatactatttacattttattttcattatagtaatgtgacata |
299 |
Q |
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| T |
8569910 |
aacaaatgctagcaacacactcttttcgtgggttcatgtgaatttttaaccaatcaaaaatactatttatattttattttcattatagtaatgtgacata |
8569811 |
T |
|
| Q |
300 |
tgacaattgaaacacatgatgctttgatggatgcaaagaagagtttgagtgagagtaaaaacatcactttagtcctcaaattataatggtcaatcaattt |
399 |
Q |
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| T |
8569810 |
tgacaattgaaacacatgatgctttgatggatgcaaagaagagtttgagtgagagtaaaaacatcactttggtcctcaaattataatggtcaatcaattt |
8569711 |
T |
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| Q |
400 |
tagtcactaaat |
411 |
Q |
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| T |
8569710 |
tagacactaaat |
8569699 |
T |
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