View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_high_20 (Length: 202)
Name: NF10905_high_20
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 25987080 - 25986908
Alignment:
| Q |
10 |
ttgcattgatggttatttttgtccctcacgttgtcgtactatttaaagaagttgcataatctccccttggccatggtatatttatcacaaccaaagaatg |
109 |
Q |
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| T |
25987080 |
ttgcattgatgattatttttgtccctcacgttgtcgtactatttaaagaagttgcataatctccccttggccatggtgtatttatcacaaccaaagaatg |
25986981 |
T |
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| Q |
110 |
ttgtccaagcagtacaaagaggaaatggaaaccacatcaacattaaaactagagtgttacttttctcaccctatg |
184 |
Q |
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| T |
25986980 |
ttgtccaagcagtacaaagaggaaatggaaaccacattaacattaaaact--agtgttactttttccaccctatg |
25986908 |
T |
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