View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10905_high_6 (Length: 363)
Name: NF10905_high_6
Description: NF10905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10905_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 38052177 - 38052512
Alignment:
| Q |
18 |
aaattcagtcaaaatgcaccagctgcagtttccaaatacttaccatcatcactcttagaaaatcaacaagagttagaattattagatcccatttcatcat |
117 |
Q |
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| T |
38052177 |
aaattcagtcaaaatgcaccagctgcagtttccaaatacttaccatcatcactcttagaaaatcaacaagagttagaattattagatcccatttcatcat |
38052276 |
T |
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| Q |
118 |
atatgcatttactttatgacttgcaagatactactttaggttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttga |
217 |
Q |
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| T |
38052277 |
atatgcatttactttatgacttgcaagatactactttaggttctcttctttcagctctaatgcaacactgtgtaccaccacaaagaagattccctcttga |
38052376 |
T |
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| Q |
218 |
aataggtttggctcctccatggtggcctaatggaacagaacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaa |
317 |
Q |
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| T |
38052377 |
aataggtttggctcctccatggtggcctaatggaacagaacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaa |
38052476 |
T |
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| Q |
318 |
cctcatgatttgaaaaaggcttggaaagtttctgtg |
353 |
Q |
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| T |
38052477 |
cctcatgatttgaaaaaggcttggaaagtttctgtg |
38052512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 352
Target Start/End: Original strand, 39679769 - 39679965
Alignment:
| Q |
156 |
ggttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacag |
255 |
Q |
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| T |
39679769 |
ggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggggaatttctcctccctggtggcccacaggatcag |
39679868 |
T |
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| Q |
256 |
aacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgt |
352 |
Q |
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| T |
39679869 |
aaaattggtggggtgaacaaggtttgttggcccaagaacaaggcccaccaccttataagaaaccacatgaccttaaaaaggcatggaaagtttctgt |
39679965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 41239896 - 41239942
Alignment:
| Q |
307 |
cttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
353 |
Q |
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| T |
41239896 |
cttataaaagaccttatgatttgaaaaaggcttggaaagtttctgtg |
41239942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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